2024-11-03T23:45:24,240 Created temporary directory: /tmp/pip-build-tracker-q14xeu7n
2024-11-03T23:45:24,241 Initialized build tracking at /tmp/pip-build-tracker-q14xeu7n
2024-11-03T23:45:24,242 Created build tracker: /tmp/pip-build-tracker-q14xeu7n
2024-11-03T23:45:24,242 Entered build tracker: /tmp/pip-build-tracker-q14xeu7n
2024-11-03T23:45:24,243 Created temporary directory: /tmp/pip-wheel-yn_g_htm
2024-11-03T23:45:24,248 Created temporary directory: /tmp/pip-ephem-wheel-cache-txwmyvtt
2024-11-03T23:45:24,292 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-03T23:45:24,295 2 location(s) to search for versions of proteomedataprep:
2024-11-03T23:45:24,295 * https://pypi.org/simple/proteomedataprep/
2024-11-03T23:45:24,295 * https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:45:24,296 Fetching project page and analyzing links: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:45:24,297 Getting page https://pypi.org/simple/proteomedataprep/
2024-11-03T23:45:24,298 Found index url https://pypi.org/simple/
2024-11-03T23:45:24,519 Fetched page https://pypi.org/simple/proteomedataprep/ as application/vnd.pypi.simple.v1+json
2024-11-03T23:45:24,523   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/43/6b/4e39e06e38aaf068629784a7295f5a051bf2f045fda0d161ac781e77fed8/ProteomeDataPrep-0.1.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,524   Found link https://files.pythonhosted.org/packages/c5/aa/27a6f70896dfb99a924f00c909a438019868aec0e1e7d48696edd83ec7c3/proteomedataprep-0.1.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.1.0
2024-11-03T23:45:24,524   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/c4/44/e6d782cb71a9efd4b62a6db38610962ba23731e2b1de6e03c3247a74db5a/ProteomeDataPrep-0.2.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,525   Found link https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.0
2024-11-03T23:45:24,526   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/71/4d/1a0a049752b2614e34d3b027a66853f242586403db0ae623c789716c34bc/ProteomeDataPrep-0.2.1-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,527   Found link https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.1
2024-11-03T23:45:24,527   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ac/64/a3abb82026c082f787dfc15ba35271a8ec9f8a092e368226f5912dda8450/ProteomeDataPrep-0.2.2-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,528   Found link https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.2
2024-11-03T23:45:24,529   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/2f/4f/34eb6fb5ef8ad1fd3183d5b9d2721dc619c7b5cd28dcb724dcdb58c0a8b7/ProteomeDataPrep-0.2.3-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,530   Found link https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.3
2024-11-03T23:45:24,530   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ad/04/1e3763d8b16ec3a5aed7213b2fc58f08f3fc8b6972a121b47c2405f6be47/ProteomeDataPrep-0.2.4-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,531   Found link https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.4
2024-11-03T23:45:24,533 Fetching project page and analyzing links: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:45:24,533 Getting page https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:45:24,535 Found index url https://www.piwheels.org/simple/
2024-11-03T23:45:24,699 Fetched page https://www.piwheels.org/simple/proteomedataprep/ as text/html
2024-11-03T23:45:24,701   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.1-py3-none-any.whl#sha256=f601afca63d23535b72b4a262681f6cf42814a62958523d20286d1f5ace4395b (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,701   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.0-py3-none-any.whl#sha256=3431642206fad994e0fd46d920b2e061cc50dfbdb50747b9d04cbdb22213f981 (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,702   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.1.0-py3-none-any.whl#sha256=d8ad9f89b3d8739e9e7779cafe89fe7ecb1dd70716a6a1141b2f2aec90b7af6d (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:45:24,702 Skipping link: not a file: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:45:24,703 Skipping link: not a file: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:45:24,721 Given no hashes to check 1 links for project 'proteomedataprep': discarding no candidates
2024-11-03T23:45:24,723 Collecting proteomedataprep==0.2.2
2024-11-03T23:45:24,725   Created temporary directory: /tmp/pip-unpack-v326ahd6
2024-11-03T23:45:24,944   Downloading proteomedataprep-0.2.2.tar.gz (838 kB)
2024-11-03T23:45:25,231   Added proteomedataprep==0.2.2 from https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-q14xeu7n'
2024-11-03T23:45:25,233   Running setup.py (path:/tmp/pip-wheel-yn_g_htm/proteomedataprep_4c536bec8f1f47219d8d5f5640c0cbc1/setup.py) egg_info for package proteomedataprep
2024-11-03T23:45:25,234   Created temporary directory: /tmp/pip-pip-egg-info-umzw6fsf
2024-11-03T23:45:25,235   Preparing metadata (setup.py): started
2024-11-03T23:45:25,236   Running command python setup.py egg_info
2024-11-03T23:45:26,300   running egg_info
2024-11-03T23:45:26,328   creating /tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info
2024-11-03T23:45:26,329   writing /tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:45:26,332   writing dependency_links to /tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:45:26,333   writing requirements to /tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:45:26,335   writing top-level names to /tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:45:26,336   writing manifest file '/tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:45:26,422   reading manifest file '/tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:45:26,427   writing manifest file '/tmp/pip-pip-egg-info-umzw6fsf/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:45:26,534   Preparing metadata (setup.py): finished with status 'done'
2024-11-03T23:45:26,538   Source in /tmp/pip-wheel-yn_g_htm/proteomedataprep_4c536bec8f1f47219d8d5f5640c0cbc1 has version 0.2.2, which satisfies requirement proteomedataprep==0.2.2 from https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz
2024-11-03T23:45:26,539   Removed proteomedataprep==0.2.2 from https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-q14xeu7n'
2024-11-03T23:45:26,545 Created temporary directory: /tmp/pip-unpack-wvoe8vk8
2024-11-03T23:45:26,546 Created temporary directory: /tmp/pip-unpack-2jep84g2
2024-11-03T23:45:26,547 Building wheels for collected packages: proteomedataprep
2024-11-03T23:45:26,550   Created temporary directory: /tmp/pip-wheel-qpqc6yyd
2024-11-03T23:45:26,551   Building wheel for proteomedataprep (setup.py): started
2024-11-03T23:45:26,552   Destination directory: /tmp/pip-wheel-qpqc6yyd
2024-11-03T23:45:26,552   Running command python setup.py bdist_wheel
2024-11-03T23:45:27,552   running bdist_wheel
2024-11-03T23:45:27,681   running build
2024-11-03T23:45:27,682   running build_py
2024-11-03T23:45:27,711   creating build/lib/proteome_data_prep
2024-11-03T23:45:27,713   copying proteome_data_prep/data_loader.py -> build/lib/proteome_data_prep
2024-11-03T23:45:27,716   copying proteome_data_prep/__init__.py -> build/lib/proteome_data_prep
2024-11-03T23:45:27,718   copying proteome_data_prep/data_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:45:27,719   copying proteome_data_prep/data_container.py -> build/lib/proteome_data_prep
2024-11-03T23:45:27,721   copying proteome_data_prep/process_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:45:27,723   running egg_info
2024-11-03T23:45:27,750   writing ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:45:27,753   writing dependency_links to ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:45:27,754   writing requirements to ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:45:27,756   writing top-level names to ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:45:27,786   reading manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:45:27,791   writing manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:45:27,794   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'proteome_data_prep.data' is absent from the `packages` configuration.
2024-11-03T23:45:27,794   !!

2024-11-03T23:45:27,795           ********************************************************************************
2024-11-03T23:45:27,796           ############################
2024-11-03T23:45:27,796           # Package would be ignored #
2024-11-03T23:45:27,797           ############################
2024-11-03T23:45:27,797           Python recognizes 'proteome_data_prep.data' as an importable package[^1],
2024-11-03T23:45:27,798           but it is absent from setuptools' `packages` configuration.

2024-11-03T23:45:27,799           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-03T23:45:27,800           package, please make sure that 'proteome_data_prep.data' is explicitly added
2024-11-03T23:45:27,800           to the `packages` configuration field.

2024-11-03T23:45:27,801           Alternatively, you can also rely on setuptools' discovery methods
2024-11-03T23:45:27,802           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-03T23:45:27,802           instead of `find_packages(...)`/`find:`).

2024-11-03T23:45:27,803           You can read more about "package discovery" on setuptools documentation page:

2024-11-03T23:45:27,804           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-03T23:45:27,806           If you don't want 'proteome_data_prep.data' to be distributed and are
2024-11-03T23:45:27,806           already explicitly excluding 'proteome_data_prep.data' via
2024-11-03T23:45:27,807           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-03T23:45:27,808           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-03T23:45:27,809           combination with a more fine grained `package-data` configuration.

2024-11-03T23:45:27,810           You can read more about "package data files" on setuptools documentation page:

2024-11-03T23:45:27,810           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-03T23:45:27,812           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-03T23:45:27,812                 even if it does not contain any `.py` files.
2024-11-03T23:45:27,813                 On the other hand, currently there is no concept of package data
2024-11-03T23:45:27,813                 directory, all directories are treated like packages.
2024-11-03T23:45:27,813           ********************************************************************************

2024-11-03T23:45:27,814   !!
2024-11-03T23:45:27,815     check.warn(importable)
2024-11-03T23:45:27,815   creating build/lib/proteome_data_prep/data
2024-11-03T23:45:27,816   copying proteome_data_prep/data/acc_by_tf_gene.json -> build/lib/proteome_data_prep/data
2024-11-03T23:45:27,816   copying proteome_data_prep/data/bad_batches.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:45:27,817   copying proteome_data_prep/data/gene_info_by_acc.json -> build/lib/proteome_data_prep/data
2024-11-03T23:45:27,876   copying proteome_data_prep/data/tf_proteins.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:45:27,906   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-03T23:45:27,907   !!

2024-11-03T23:45:27,908           ********************************************************************************
2024-11-03T23:45:27,908           Please avoid running ``setup.py`` directly.
2024-11-03T23:45:27,909           Instead, use pypa/build, pypa/installer or other
2024-11-03T23:45:27,910           standards-based tools.

2024-11-03T23:45:27,911           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-03T23:45:27,911           ********************************************************************************

2024-11-03T23:45:27,913   !!
2024-11-03T23:45:27,913     self.initialize_options()
2024-11-03T23:45:27,937   installing to build/bdist.linux-armv7l/wheel
2024-11-03T23:45:27,937   running install
2024-11-03T23:45:27,962   running install_lib
2024-11-03T23:45:27,992   creating build/bdist.linux-armv7l/wheel
2024-11-03T23:45:27,995   creating build/bdist.linux-armv7l/wheel/proteome_data_prep
2024-11-03T23:45:27,996   copying build/lib/proteome_data_prep/data_loader.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:45:27,999   copying build/lib/proteome_data_prep/__init__.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:45:28,001   copying build/lib/proteome_data_prep/data_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:45:28,004   creating build/bdist.linux-armv7l/wheel/proteome_data_prep/data
2024-11-03T23:45:28,005   copying build/lib/proteome_data_prep/data/gene_info_by_acc.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:45:28,070   copying build/lib/proteome_data_prep/data/bad_batches.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:45:28,072   copying build/lib/proteome_data_prep/data/tf_proteins.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:45:28,075   copying build/lib/proteome_data_prep/data/acc_by_tf_gene.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:45:28,078   copying build/lib/proteome_data_prep/data_container.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:45:28,080   copying build/lib/proteome_data_prep/process_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:45:28,083   running install_egg_info
2024-11-03T23:45:28,116   Copying ProteomeDataPrep.egg-info to build/bdist.linux-armv7l/wheel/./ProteomeDataPrep-0.2.2-py3.11.egg-info
2024-11-03T23:45:28,126   running install_scripts
2024-11-03T23:45:28,138   creating build/bdist.linux-armv7l/wheel/ProteomeDataPrep-0.2.2.dist-info/WHEEL
2024-11-03T23:45:28,141   creating '/tmp/pip-wheel-qpqc6yyd/ProteomeDataPrep-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-03T23:45:28,144   adding 'proteome_data_prep/__init__.py'
2024-11-03T23:45:28,146   adding 'proteome_data_prep/data_container.py'
2024-11-03T23:45:28,148   adding 'proteome_data_prep/data_loader.py'
2024-11-03T23:45:28,150   adding 'proteome_data_prep/data_utils.py'
2024-11-03T23:45:28,153   adding 'proteome_data_prep/process_utils.py'
2024-11-03T23:45:28,160   adding 'proteome_data_prep/data/acc_by_tf_gene.json'
2024-11-03T23:45:28,161   adding 'proteome_data_prep/data/bad_batches.txt'
2024-11-03T23:45:28,503   adding 'proteome_data_prep/data/gene_info_by_acc.json'
2024-11-03T23:45:28,543   adding 'proteome_data_prep/data/tf_proteins.txt'
2024-11-03T23:45:28,545   adding 'ProteomeDataPrep-0.2.2.dist-info/METADATA'
2024-11-03T23:45:28,546   adding 'ProteomeDataPrep-0.2.2.dist-info/WHEEL'
2024-11-03T23:45:28,547   adding 'ProteomeDataPrep-0.2.2.dist-info/top_level.txt'
2024-11-03T23:45:28,548   adding 'ProteomeDataPrep-0.2.2.dist-info/RECORD'
2024-11-03T23:45:28,558   removing build/bdist.linux-armv7l/wheel
2024-11-03T23:45:28,674   Building wheel for proteomedataprep (setup.py): finished with status 'done'
2024-11-03T23:45:28,685   Created wheel for proteomedataprep: filename=ProteomeDataPrep-0.2.2-py3-none-any.whl size=860818 sha256=e2141b6d18c339178827227151421668234574ea1aff8b77e9980d3558ccd58e
2024-11-03T23:45:28,686   Stored in directory: /tmp/pip-ephem-wheel-cache-txwmyvtt/wheels/36/e1/42/81f864f04580bb0efa94cf0ea9749233f47e2607829d7de884
2024-11-03T23:45:28,695 Successfully built proteomedataprep
2024-11-03T23:45:28,727 Removed build tracker: '/tmp/pip-build-tracker-q14xeu7n'