2024-11-03T23:49:31,023 Created temporary directory: /tmp/pip-build-tracker-sjbyojsp
2024-11-03T23:49:31,024 Initialized build tracking at /tmp/pip-build-tracker-sjbyojsp
2024-11-03T23:49:31,025 Created build tracker: /tmp/pip-build-tracker-sjbyojsp
2024-11-03T23:49:31,025 Entered build tracker: /tmp/pip-build-tracker-sjbyojsp
2024-11-03T23:49:31,026 Created temporary directory: /tmp/pip-wheel-ikjwvllt
2024-11-03T23:49:31,030 Created temporary directory: /tmp/pip-ephem-wheel-cache-bisu_3sx
2024-11-03T23:49:31,074 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-03T23:49:31,076 2 location(s) to search for versions of proteomedataprep:
2024-11-03T23:49:31,076 * https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:31,076 * https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:31,077 Fetching project page and analyzing links: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:31,078 Getting page https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:31,079 Found index url https://pypi.org/simple/
2024-11-03T23:49:31,298 Fetched page https://pypi.org/simple/proteomedataprep/ as application/vnd.pypi.simple.v1+json
2024-11-03T23:49:31,302   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/43/6b/4e39e06e38aaf068629784a7295f5a051bf2f045fda0d161ac781e77fed8/ProteomeDataPrep-0.1.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,303   Found link https://files.pythonhosted.org/packages/c5/aa/27a6f70896dfb99a924f00c909a438019868aec0e1e7d48696edd83ec7c3/proteomedataprep-0.1.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.1.0
2024-11-03T23:49:31,304   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/c4/44/e6d782cb71a9efd4b62a6db38610962ba23731e2b1de6e03c3247a74db5a/ProteomeDataPrep-0.2.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,305   Found link https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.0
2024-11-03T23:49:31,305   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/71/4d/1a0a049752b2614e34d3b027a66853f242586403db0ae623c789716c34bc/ProteomeDataPrep-0.2.1-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,306   Found link https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.1
2024-11-03T23:49:31,307   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ac/64/a3abb82026c082f787dfc15ba35271a8ec9f8a092e368226f5912dda8450/ProteomeDataPrep-0.2.2-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,308   Found link https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.2
2024-11-03T23:49:31,308   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/2f/4f/34eb6fb5ef8ad1fd3183d5b9d2721dc619c7b5cd28dcb724dcdb58c0a8b7/ProteomeDataPrep-0.2.3-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,309   Found link https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.3
2024-11-03T23:49:31,310   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ad/04/1e3763d8b16ec3a5aed7213b2fc58f08f3fc8b6972a121b47c2405f6be47/ProteomeDataPrep-0.2.4-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,311   Found link https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.4
2024-11-03T23:49:31,312 Fetching project page and analyzing links: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:31,312 Getting page https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:31,314 Found index url https://www.piwheels.org/simple/
2024-11-03T23:49:31,472 Fetched page https://www.piwheels.org/simple/proteomedataprep/ as text/html
2024-11-03T23:49:31,474   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.2-py3-none-any.whl#sha256=e2141b6d18c339178827227151421668234574ea1aff8b77e9980d3558ccd58e (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,475   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.1-py3-none-any.whl#sha256=f601afca63d23535b72b4a262681f6cf42814a62958523d20286d1f5ace4395b (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,475   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.0-py3-none-any.whl#sha256=3431642206fad994e0fd46d920b2e061cc50dfbdb50747b9d04cbdb22213f981 (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,476   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.1.0-py3-none-any.whl#sha256=d8ad9f89b3d8739e9e7779cafe89fe7ecb1dd70716a6a1141b2f2aec90b7af6d (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:31,477 Skipping link: not a file: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:31,477 Skipping link: not a file: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:31,497 Given no hashes to check 1 links for project 'proteomedataprep': discarding no candidates
2024-11-03T23:49:31,499 Collecting proteomedataprep==0.2.3
2024-11-03T23:49:31,501   Created temporary directory: /tmp/pip-unpack-vad9ok13
2024-11-03T23:49:31,721   Downloading proteomedataprep-0.2.3.tar.gz (838 kB)
2024-11-03T23:49:32,024   Added proteomedataprep==0.2.3 from https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-sjbyojsp'
2024-11-03T23:49:32,028   Running setup.py (path:/tmp/pip-wheel-ikjwvllt/proteomedataprep_eff2dbfb571141db92d9873b07ace2da/setup.py) egg_info for package proteomedataprep
2024-11-03T23:49:32,029   Created temporary directory: /tmp/pip-pip-egg-info-xtrh1k62
2024-11-03T23:49:32,029   Preparing metadata (setup.py): started
2024-11-03T23:49:32,031   Running command python setup.py egg_info
2024-11-03T23:49:33,225   running egg_info
2024-11-03T23:49:33,252   creating /tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info
2024-11-03T23:49:33,254   writing /tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:49:33,257   writing dependency_links to /tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:49:33,259   writing requirements to /tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:49:33,260   writing top-level names to /tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:49:33,261   writing manifest file '/tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:33,348   reading manifest file '/tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:33,352   writing manifest file '/tmp/pip-pip-egg-info-xtrh1k62/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:33,461   Preparing metadata (setup.py): finished with status 'done'
2024-11-03T23:49:33,465   Source in /tmp/pip-wheel-ikjwvllt/proteomedataprep_eff2dbfb571141db92d9873b07ace2da has version 0.2.3, which satisfies requirement proteomedataprep==0.2.3 from https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz
2024-11-03T23:49:33,466   Removed proteomedataprep==0.2.3 from https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-sjbyojsp'
2024-11-03T23:49:33,472 Created temporary directory: /tmp/pip-unpack-killrqgl
2024-11-03T23:49:33,473 Created temporary directory: /tmp/pip-unpack-_apqbczh
2024-11-03T23:49:33,474 Building wheels for collected packages: proteomedataprep
2024-11-03T23:49:33,478   Created temporary directory: /tmp/pip-wheel-44r_pmyd
2024-11-03T23:49:33,479   Building wheel for proteomedataprep (setup.py): started
2024-11-03T23:49:33,480   Destination directory: /tmp/pip-wheel-44r_pmyd
2024-11-03T23:49:33,480   Running command python setup.py bdist_wheel
2024-11-03T23:49:34,500   running bdist_wheel
2024-11-03T23:49:34,632   running build
2024-11-03T23:49:34,633   running build_py
2024-11-03T23:49:34,663   creating build/lib/proteome_data_prep
2024-11-03T23:49:34,665   copying proteome_data_prep/process_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:49:34,668   copying proteome_data_prep/data_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:49:34,670   copying proteome_data_prep/data_container.py -> build/lib/proteome_data_prep
2024-11-03T23:49:34,672   copying proteome_data_prep/data_loader.py -> build/lib/proteome_data_prep
2024-11-03T23:49:34,674   copying proteome_data_prep/__init__.py -> build/lib/proteome_data_prep
2024-11-03T23:49:34,676   running egg_info
2024-11-03T23:49:34,704   writing ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:49:34,707   writing dependency_links to ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:49:34,709   writing requirements to ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:49:34,710   writing top-level names to ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:49:34,741   reading manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:34,746   writing manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:34,749   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'proteome_data_prep.data' is absent from the `packages` configuration.
2024-11-03T23:49:34,749   !!

2024-11-03T23:49:34,750           ********************************************************************************
2024-11-03T23:49:34,751           ############################
2024-11-03T23:49:34,751           # Package would be ignored #
2024-11-03T23:49:34,752           ############################
2024-11-03T23:49:34,752           Python recognizes 'proteome_data_prep.data' as an importable package[^1],
2024-11-03T23:49:34,762           but it is absent from setuptools' `packages` configuration.

2024-11-03T23:49:34,764           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-03T23:49:34,764           package, please make sure that 'proteome_data_prep.data' is explicitly added
2024-11-03T23:49:34,765           to the `packages` configuration field.

2024-11-03T23:49:34,766           Alternatively, you can also rely on setuptools' discovery methods
2024-11-03T23:49:34,766           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-03T23:49:34,767           instead of `find_packages(...)`/`find:`).

2024-11-03T23:49:34,768           You can read more about "package discovery" on setuptools documentation page:

2024-11-03T23:49:34,770           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-03T23:49:34,770           If you don't want 'proteome_data_prep.data' to be distributed and are
2024-11-03T23:49:34,771           already explicitly excluding 'proteome_data_prep.data' via
2024-11-03T23:49:34,771           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-03T23:49:34,772           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-03T23:49:34,772           combination with a more fine grained `package-data` configuration.

2024-11-03T23:49:34,773           You can read more about "package data files" on setuptools documentation page:

2024-11-03T23:49:34,774           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-03T23:49:34,776           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-03T23:49:34,776                 even if it does not contain any `.py` files.
2024-11-03T23:49:34,777                 On the other hand, currently there is no concept of package data
2024-11-03T23:49:34,777                 directory, all directories are treated like packages.
2024-11-03T23:49:34,778           ********************************************************************************

2024-11-03T23:49:34,779   !!
2024-11-03T23:49:34,779     check.warn(importable)
2024-11-03T23:49:34,780   creating build/lib/proteome_data_prep/data
2024-11-03T23:49:34,780   copying proteome_data_prep/data/acc_by_tf_gene.json -> build/lib/proteome_data_prep/data
2024-11-03T23:49:34,781   copying proteome_data_prep/data/bad_batches.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:49:34,782   copying proteome_data_prep/data/gene_info_by_acc.json -> build/lib/proteome_data_prep/data
2024-11-03T23:49:34,836   copying proteome_data_prep/data/tf_proteins.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:49:34,867   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-03T23:49:34,867   !!

2024-11-03T23:49:34,868           ********************************************************************************
2024-11-03T23:49:34,869           Please avoid running ``setup.py`` directly.
2024-11-03T23:49:34,869           Instead, use pypa/build, pypa/installer or other
2024-11-03T23:49:34,870           standards-based tools.

2024-11-03T23:49:34,871           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-03T23:49:34,871           ********************************************************************************

2024-11-03T23:49:34,872   !!
2024-11-03T23:49:34,873     self.initialize_options()
2024-11-03T23:49:34,896   installing to build/bdist.linux-armv7l/wheel
2024-11-03T23:49:34,897   running install
2024-11-03T23:49:34,921   running install_lib
2024-11-03T23:49:34,952   creating build/bdist.linux-armv7l/wheel
2024-11-03T23:49:34,954   creating build/bdist.linux-armv7l/wheel/proteome_data_prep
2024-11-03T23:49:34,956   copying build/lib/proteome_data_prep/process_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:34,958   copying build/lib/proteome_data_prep/data_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:34,960   copying build/lib/proteome_data_prep/data_container.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:34,963   copying build/lib/proteome_data_prep/data_loader.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:34,966   creating build/bdist.linux-armv7l/wheel/proteome_data_prep/data
2024-11-03T23:49:34,967   copying build/lib/proteome_data_prep/data/acc_by_tf_gene.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:34,970   copying build/lib/proteome_data_prep/data/gene_info_by_acc.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:35,034   copying build/lib/proteome_data_prep/data/tf_proteins.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:35,037   copying build/lib/proteome_data_prep/data/bad_batches.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:35,039   copying build/lib/proteome_data_prep/__init__.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:35,041   running install_egg_info
2024-11-03T23:49:35,077   Copying ProteomeDataPrep.egg-info to build/bdist.linux-armv7l/wheel/./ProteomeDataPrep-0.2.3-py3.11.egg-info
2024-11-03T23:49:35,087   running install_scripts
2024-11-03T23:49:35,099   creating build/bdist.linux-armv7l/wheel/ProteomeDataPrep-0.2.3.dist-info/WHEEL
2024-11-03T23:49:35,101   creating '/tmp/pip-wheel-44r_pmyd/ProteomeDataPrep-0.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-03T23:49:35,104   adding 'proteome_data_prep/__init__.py'
2024-11-03T23:49:35,106   adding 'proteome_data_prep/data_container.py'
2024-11-03T23:49:35,108   adding 'proteome_data_prep/data_loader.py'
2024-11-03T23:49:35,109   adding 'proteome_data_prep/data_utils.py'
2024-11-03T23:49:35,113   adding 'proteome_data_prep/process_utils.py'
2024-11-03T23:49:35,119   adding 'proteome_data_prep/data/acc_by_tf_gene.json'
2024-11-03T23:49:35,121   adding 'proteome_data_prep/data/bad_batches.txt'
2024-11-03T23:49:35,469   adding 'proteome_data_prep/data/gene_info_by_acc.json'
2024-11-03T23:49:35,508   adding 'proteome_data_prep/data/tf_proteins.txt'
2024-11-03T23:49:35,510   adding 'ProteomeDataPrep-0.2.3.dist-info/METADATA'
2024-11-03T23:49:35,510   adding 'ProteomeDataPrep-0.2.3.dist-info/WHEEL'
2024-11-03T23:49:35,511   adding 'ProteomeDataPrep-0.2.3.dist-info/top_level.txt'
2024-11-03T23:49:35,512   adding 'ProteomeDataPrep-0.2.3.dist-info/RECORD'
2024-11-03T23:49:35,525   removing build/bdist.linux-armv7l/wheel
2024-11-03T23:49:35,644   Building wheel for proteomedataprep (setup.py): finished with status 'done'
2024-11-03T23:49:35,655   Created wheel for proteomedataprep: filename=ProteomeDataPrep-0.2.3-py3-none-any.whl size=860811 sha256=ebebd8113ff1bf0062eace631c018d3126e7ced75dd7756eb10a94b697772406
2024-11-03T23:49:35,656   Stored in directory: /tmp/pip-ephem-wheel-cache-bisu_3sx/wheels/23/70/cf/61c507e7fd619e38db1a234909ebafef52898b53c1de3e42fb
2024-11-03T23:49:35,666 Successfully built proteomedataprep
2024-11-03T23:49:35,692 Removed build tracker: '/tmp/pip-build-tracker-sjbyojsp'