2024-11-03T23:49:46,309 Created temporary directory: /tmp/pip-build-tracker-q21l2906
2024-11-03T23:49:46,310 Initialized build tracking at /tmp/pip-build-tracker-q21l2906
2024-11-03T23:49:46,311 Created build tracker: /tmp/pip-build-tracker-q21l2906
2024-11-03T23:49:46,311 Entered build tracker: /tmp/pip-build-tracker-q21l2906
2024-11-03T23:49:46,312 Created temporary directory: /tmp/pip-wheel-aqtuppur
2024-11-03T23:49:46,316 Created temporary directory: /tmp/pip-ephem-wheel-cache-q1qs7q0k
2024-11-03T23:49:46,360 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-03T23:49:46,363 2 location(s) to search for versions of proteomedataprep:
2024-11-03T23:49:46,363 * https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:46,363 * https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:46,363 Fetching project page and analyzing links: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:46,364 Getting page https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:46,366 Found index url https://pypi.org/simple/
2024-11-03T23:49:46,509 Fetched page https://pypi.org/simple/proteomedataprep/ as application/vnd.pypi.simple.v1+json
2024-11-03T23:49:46,513   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/43/6b/4e39e06e38aaf068629784a7295f5a051bf2f045fda0d161ac781e77fed8/ProteomeDataPrep-0.1.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,514   Found link https://files.pythonhosted.org/packages/c5/aa/27a6f70896dfb99a924f00c909a438019868aec0e1e7d48696edd83ec7c3/proteomedataprep-0.1.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.1.0
2024-11-03T23:49:46,515   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/c4/44/e6d782cb71a9efd4b62a6db38610962ba23731e2b1de6e03c3247a74db5a/ProteomeDataPrep-0.2.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,516   Found link https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.0
2024-11-03T23:49:46,517   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/71/4d/1a0a049752b2614e34d3b027a66853f242586403db0ae623c789716c34bc/ProteomeDataPrep-0.2.1-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,518   Found link https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.1
2024-11-03T23:49:46,519   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ac/64/a3abb82026c082f787dfc15ba35271a8ec9f8a092e368226f5912dda8450/ProteomeDataPrep-0.2.2-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,520   Found link https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.2
2024-11-03T23:49:46,521   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/2f/4f/34eb6fb5ef8ad1fd3183d5b9d2721dc619c7b5cd28dcb724dcdb58c0a8b7/ProteomeDataPrep-0.2.3-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,522   Found link https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.3
2024-11-03T23:49:46,522   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ad/04/1e3763d8b16ec3a5aed7213b2fc58f08f3fc8b6972a121b47c2405f6be47/ProteomeDataPrep-0.2.4-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,523   Found link https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.4
2024-11-03T23:49:46,525 Fetching project page and analyzing links: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:46,525 Getting page https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:46,526 Found index url https://www.piwheels.org/simple/
2024-11-03T23:49:46,705 Fetched page https://www.piwheels.org/simple/proteomedataprep/ as text/html
2024-11-03T23:49:46,707   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.2-py3-none-any.whl#sha256=e2141b6d18c339178827227151421668234574ea1aff8b77e9980d3558ccd58e (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,708   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.1-py3-none-any.whl#sha256=f601afca63d23535b72b4a262681f6cf42814a62958523d20286d1f5ace4395b (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,708   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.0-py3-none-any.whl#sha256=3431642206fad994e0fd46d920b2e061cc50dfbdb50747b9d04cbdb22213f981 (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,709   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.1.0-py3-none-any.whl#sha256=d8ad9f89b3d8739e9e7779cafe89fe7ecb1dd70716a6a1141b2f2aec90b7af6d (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T23:49:46,709 Skipping link: not a file: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T23:49:46,710 Skipping link: not a file: https://pypi.org/simple/proteomedataprep/
2024-11-03T23:49:46,730 Given no hashes to check 1 links for project 'proteomedataprep': discarding no candidates
2024-11-03T23:49:46,731 Collecting proteomedataprep==0.2.4
2024-11-03T23:49:46,734   Created temporary directory: /tmp/pip-unpack-n3cwc8wb
2024-11-03T23:49:46,954   Downloading proteomedataprep-0.2.4.tar.gz (838 kB)
2024-11-03T23:49:47,250   Added proteomedataprep==0.2.4 from https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-q21l2906'
2024-11-03T23:49:47,252   Running setup.py (path:/tmp/pip-wheel-aqtuppur/proteomedataprep_e27aedd894d2452e9fd25610bec58deb/setup.py) egg_info for package proteomedataprep
2024-11-03T23:49:47,253   Created temporary directory: /tmp/pip-pip-egg-info-5sonlpjj
2024-11-03T23:49:47,254   Preparing metadata (setup.py): started
2024-11-03T23:49:47,255   Running command python setup.py egg_info
2024-11-03T23:49:48,326   running egg_info
2024-11-03T23:49:48,353   creating /tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info
2024-11-03T23:49:48,354   writing /tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:49:48,357   writing dependency_links to /tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:49:48,359   writing requirements to /tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:49:48,360   writing top-level names to /tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:49:48,361   writing manifest file '/tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:48,447   reading manifest file '/tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:48,451   writing manifest file '/tmp/pip-pip-egg-info-5sonlpjj/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:48,560   Preparing metadata (setup.py): finished with status 'done'
2024-11-03T23:49:48,564   Source in /tmp/pip-wheel-aqtuppur/proteomedataprep_e27aedd894d2452e9fd25610bec58deb has version 0.2.4, which satisfies requirement proteomedataprep==0.2.4 from https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz
2024-11-03T23:49:48,565   Removed proteomedataprep==0.2.4 from https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-q21l2906'
2024-11-03T23:49:48,571 Created temporary directory: /tmp/pip-unpack-1ngag1pk
2024-11-03T23:49:48,572 Created temporary directory: /tmp/pip-unpack-88dj5h_i
2024-11-03T23:49:48,572 Building wheels for collected packages: proteomedataprep
2024-11-03T23:49:48,576   Created temporary directory: /tmp/pip-wheel-pvgai6c5
2024-11-03T23:49:48,577   Building wheel for proteomedataprep (setup.py): started
2024-11-03T23:49:48,578   Destination directory: /tmp/pip-wheel-pvgai6c5
2024-11-03T23:49:48,578   Running command python setup.py bdist_wheel
2024-11-03T23:49:49,606   running bdist_wheel
2024-11-03T23:49:49,737   running build
2024-11-03T23:49:49,738   running build_py
2024-11-03T23:49:49,772   creating build/lib/proteome_data_prep
2024-11-03T23:49:49,774   copying proteome_data_prep/data_loader.py -> build/lib/proteome_data_prep
2024-11-03T23:49:49,777   copying proteome_data_prep/process_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:49:49,780   copying proteome_data_prep/__init__.py -> build/lib/proteome_data_prep
2024-11-03T23:49:49,782   copying proteome_data_prep/data_container.py -> build/lib/proteome_data_prep
2024-11-03T23:49:49,784   copying proteome_data_prep/data_utils.py -> build/lib/proteome_data_prep
2024-11-03T23:49:49,785   running egg_info
2024-11-03T23:49:49,813   writing ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T23:49:49,815   writing dependency_links to ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T23:49:49,817   writing requirements to ProteomeDataPrep.egg-info/requires.txt
2024-11-03T23:49:49,818   writing top-level names to ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T23:49:49,849   reading manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:49,854   writing manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T23:49:49,856   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'proteome_data_prep.data' is absent from the `packages` configuration.
2024-11-03T23:49:49,857   !!

2024-11-03T23:49:49,858           ********************************************************************************
2024-11-03T23:49:49,859           ############################
2024-11-03T23:49:49,859           # Package would be ignored #
2024-11-03T23:49:49,860           ############################
2024-11-03T23:49:49,861           Python recognizes 'proteome_data_prep.data' as an importable package[^1],
2024-11-03T23:49:49,861           but it is absent from setuptools' `packages` configuration.

2024-11-03T23:49:49,862           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-03T23:49:49,863           package, please make sure that 'proteome_data_prep.data' is explicitly added
2024-11-03T23:49:49,864           to the `packages` configuration field.

2024-11-03T23:49:49,865           Alternatively, you can also rely on setuptools' discovery methods
2024-11-03T23:49:49,866           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-03T23:49:49,866           instead of `find_packages(...)`/`find:`).

2024-11-03T23:49:49,868           You can read more about "package discovery" on setuptools documentation page:

2024-11-03T23:49:49,875           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-03T23:49:49,876           If you don't want 'proteome_data_prep.data' to be distributed and are
2024-11-03T23:49:49,876           already explicitly excluding 'proteome_data_prep.data' via
2024-11-03T23:49:49,877           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-03T23:49:49,877           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-03T23:49:49,878           combination with a more fine grained `package-data` configuration.

2024-11-03T23:49:49,879           You can read more about "package data files" on setuptools documentation page:

2024-11-03T23:49:49,879           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-03T23:49:49,881           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-03T23:49:49,881                 even if it does not contain any `.py` files.
2024-11-03T23:49:49,882                 On the other hand, currently there is no concept of package data
2024-11-03T23:49:49,882                 directory, all directories are treated like packages.
2024-11-03T23:49:49,883           ********************************************************************************

2024-11-03T23:49:49,884   !!
2024-11-03T23:49:49,884     check.warn(importable)
2024-11-03T23:49:49,885   creating build/lib/proteome_data_prep/data
2024-11-03T23:49:49,885   copying proteome_data_prep/data/acc_by_tf_gene.json -> build/lib/proteome_data_prep/data
2024-11-03T23:49:49,886   copying proteome_data_prep/data/bad_batches.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:49:49,886   copying proteome_data_prep/data/gene_info_by_acc.json -> build/lib/proteome_data_prep/data
2024-11-03T23:49:49,935   copying proteome_data_prep/data/tf_proteins.txt -> build/lib/proteome_data_prep/data
2024-11-03T23:49:49,965   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-03T23:49:49,966   !!

2024-11-03T23:49:49,967           ********************************************************************************
2024-11-03T23:49:49,967           Please avoid running ``setup.py`` directly.
2024-11-03T23:49:49,968           Instead, use pypa/build, pypa/installer or other
2024-11-03T23:49:49,968           standards-based tools.

2024-11-03T23:49:49,970           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-03T23:49:49,970           ********************************************************************************

2024-11-03T23:49:49,971   !!
2024-11-03T23:49:49,972     self.initialize_options()
2024-11-03T23:49:49,994   installing to build/bdist.linux-armv7l/wheel
2024-11-03T23:49:49,994   running install
2024-11-03T23:49:50,019   running install_lib
2024-11-03T23:49:50,050   creating build/bdist.linux-armv7l/wheel
2024-11-03T23:49:50,052   creating build/bdist.linux-armv7l/wheel/proteome_data_prep
2024-11-03T23:49:50,053   copying build/lib/proteome_data_prep/data_loader.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:50,056   copying build/lib/proteome_data_prep/process_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:50,058   copying build/lib/proteome_data_prep/__init__.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:50,060   creating build/bdist.linux-armv7l/wheel/proteome_data_prep/data
2024-11-03T23:49:50,061   copying build/lib/proteome_data_prep/data/gene_info_by_acc.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:50,126   copying build/lib/proteome_data_prep/data/acc_by_tf_gene.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:50,129   copying build/lib/proteome_data_prep/data/bad_batches.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:50,131   copying build/lib/proteome_data_prep/data/tf_proteins.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T23:49:50,134   copying build/lib/proteome_data_prep/data_container.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:50,136   copying build/lib/proteome_data_prep/data_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T23:49:50,138   running install_egg_info
2024-11-03T23:49:50,170   Copying ProteomeDataPrep.egg-info to build/bdist.linux-armv7l/wheel/./ProteomeDataPrep-0.2.4-py3.11.egg-info
2024-11-03T23:49:50,180   running install_scripts
2024-11-03T23:49:50,191   creating build/bdist.linux-armv7l/wheel/ProteomeDataPrep-0.2.4.dist-info/WHEEL
2024-11-03T23:49:50,194   creating '/tmp/pip-wheel-pvgai6c5/ProteomeDataPrep-0.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-03T23:49:50,197   adding 'proteome_data_prep/__init__.py'
2024-11-03T23:49:50,199   adding 'proteome_data_prep/data_container.py'
2024-11-03T23:49:50,201   adding 'proteome_data_prep/data_loader.py'
2024-11-03T23:49:50,203   adding 'proteome_data_prep/data_utils.py'
2024-11-03T23:49:50,206   adding 'proteome_data_prep/process_utils.py'
2024-11-03T23:49:50,213   adding 'proteome_data_prep/data/acc_by_tf_gene.json'
2024-11-03T23:49:50,215   adding 'proteome_data_prep/data/bad_batches.txt'
2024-11-03T23:49:50,563   adding 'proteome_data_prep/data/gene_info_by_acc.json'
2024-11-03T23:49:50,603   adding 'proteome_data_prep/data/tf_proteins.txt'
2024-11-03T23:49:50,605   adding 'ProteomeDataPrep-0.2.4.dist-info/METADATA'
2024-11-03T23:49:50,606   adding 'ProteomeDataPrep-0.2.4.dist-info/WHEEL'
2024-11-03T23:49:50,607   adding 'ProteomeDataPrep-0.2.4.dist-info/top_level.txt'
2024-11-03T23:49:50,608   adding 'ProteomeDataPrep-0.2.4.dist-info/RECORD'
2024-11-03T23:49:50,621   removing build/bdist.linux-armv7l/wheel
2024-11-03T23:49:50,739   Building wheel for proteomedataprep (setup.py): finished with status 'done'
2024-11-03T23:49:50,750   Created wheel for proteomedataprep: filename=ProteomeDataPrep-0.2.4-py3-none-any.whl size=860810 sha256=505febcbae635e71aecdd302b6e469696cfd21ca17a8c0e0bb41f5a1e1e77aed
2024-11-03T23:49:50,751   Stored in directory: /tmp/pip-ephem-wheel-cache-q1qs7q0k/wheels/99/74/1a/de73a2be0f66bb4c3f2a644ad8dc58c3b3080ce16c122687ae
2024-11-03T23:49:50,761 Successfully built proteomedataprep
2024-11-03T23:49:50,791 Removed build tracker: '/tmp/pip-build-tracker-q21l2906'