2024-12-11T20:28:22,656 Created temporary directory: /tmp/pip-build-tracker-cw3u5w6d 2024-12-11T20:28:22,658 Initialized build tracking at /tmp/pip-build-tracker-cw3u5w6d 2024-12-11T20:28:22,658 Created build tracker: /tmp/pip-build-tracker-cw3u5w6d 2024-12-11T20:28:22,659 Entered build tracker: /tmp/pip-build-tracker-cw3u5w6d 2024-12-11T20:28:22,660 Created temporary directory: /tmp/pip-wheel-yb3edxui 2024-12-11T20:28:22,664 Created temporary directory: /tmp/pip-ephem-wheel-cache-r5okl1dg 2024-12-11T20:28:22,707 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-11T20:28:22,710 2 location(s) to search for versions of clasv: 2024-12-11T20:28:22,710 * https://pypi.org/simple/clasv/ 2024-12-11T20:28:22,710 * https://www.piwheels.org/simple/clasv/ 2024-12-11T20:28:22,710 Fetching project page and analyzing links: https://pypi.org/simple/clasv/ 2024-12-11T20:28:22,711 Getting page https://pypi.org/simple/clasv/ 2024-12-11T20:28:22,713 Found index url https://pypi.org/simple/ 2024-12-11T20:28:22,948 Fetched page https://pypi.org/simple/clasv/ as application/vnd.pypi.simple.v1+json 2024-12-11T20:28:22,950 Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/1a/16/db344cddef30afa227564b37850859df2be84ad92983a4e623cc6d22e358/CLASV-0.1.14-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6) 2024-12-11T20:28:22,951 Found link https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.14 2024-12-11T20:28:22,951 Fetching project page and analyzing links: https://www.piwheels.org/simple/clasv/ 2024-12-11T20:28:22,952 Getting page https://www.piwheels.org/simple/clasv/ 2024-12-11T20:28:22,953 Found index url https://www.piwheels.org/simple/ 2024-12-11T20:28:23,115 Fetched page https://www.piwheels.org/simple/clasv/ as text/html 2024-12-11T20:28:23,116 Skipping link: not a file: https://www.piwheels.org/simple/clasv/ 2024-12-11T20:28:23,117 Skipping link: not a file: https://pypi.org/simple/clasv/ 2024-12-11T20:28:23,135 Given no hashes to check 1 links for project 'clasv': discarding no candidates 2024-12-11T20:28:23,137 Collecting clasv==0.1.14 2024-12-11T20:28:23,140 Created temporary directory: /tmp/pip-unpack-bx1mow2g 2024-12-11T20:28:23,283 Downloading clasv-0.1.14.tar.gz (2.9 MB) 2024-12-11T20:28:24,144 Added clasv==0.1.14 from https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz to build tracker '/tmp/pip-build-tracker-cw3u5w6d' 2024-12-11T20:28:24,145 Running setup.py (path:/tmp/pip-wheel-yb3edxui/clasv_b52f12e8b2a64316a1a9158d42d5bb40/setup.py) egg_info for package clasv 2024-12-11T20:28:24,146 Created temporary directory: /tmp/pip-pip-egg-info-3f4nut1k 2024-12-11T20:28:24,147 Preparing metadata (setup.py): started 2024-12-11T20:28:24,148 Running command python setup.py egg_info 2024-12-11T20:28:25,222 Running setup... 2024-12-11T20:28:25,222 running egg_info 2024-12-11T20:28:25,249 creating /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info 2024-12-11T20:28:25,250 writing /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/PKG-INFO 2024-12-11T20:28:25,256 writing dependency_links to /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/dependency_links.txt 2024-12-11T20:28:25,257 writing entry points to /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/entry_points.txt 2024-12-11T20:28:25,260 writing requirements to /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/requires.txt 2024-12-11T20:28:25,261 writing top-level names to /tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/top_level.txt 2024-12-11T20:28:25,263 writing manifest file '/tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/SOURCES.txt' 2024-12-11T20:28:25,356 reading manifest file '/tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/SOURCES.txt' 2024-12-11T20:28:25,357 reading manifest template 'MANIFEST.in' 2024-12-11T20:28:25,359 warning: no files found matching 'CLASV/config/config.yaml' 2024-12-11T20:28:25,381 warning: no files found matching '*.png' under directory 'CLASV' 2024-12-11T20:28:25,386 warning: no files found matching 'config' under directory 'CLASV' 2024-12-11T20:28:25,397 warning: no files found matching 'predictions' under directory 'CLASV' 2024-12-11T20:28:25,410 warning: no files found matching 'raw_data' under directory 'CLASV' 2024-12-11T20:28:25,422 warning: no files found matching 'results' under directory 'CLASV' 2024-12-11T20:28:25,434 warning: no files found matching 'visuals' under directory 'CLASV' 2024-12-11T20:28:25,441 adding license file 'LICENSE' 2024-12-11T20:28:25,445 writing manifest file '/tmp/pip-pip-egg-info-3f4nut1k/CLASV.egg-info/SOURCES.txt' 2024-12-11T20:28:25,554 Preparing metadata (setup.py): finished with status 'done' 2024-12-11T20:28:25,560 Source in /tmp/pip-wheel-yb3edxui/clasv_b52f12e8b2a64316a1a9158d42d5bb40 has version 0.1.14, which satisfies requirement clasv==0.1.14 from https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz 2024-12-11T20:28:25,561 Removed clasv==0.1.14 from https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz from build tracker '/tmp/pip-build-tracker-cw3u5w6d' 2024-12-11T20:28:25,581 Created temporary directory: /tmp/pip-unpack-ijss5e5o 2024-12-11T20:28:25,582 Created temporary directory: /tmp/pip-unpack-y5p0tzce 2024-12-11T20:28:25,583 Building wheels for collected packages: clasv 2024-12-11T20:28:25,587 Created temporary directory: /tmp/pip-wheel-kov4r4qr 2024-12-11T20:28:25,587 Building wheel for clasv (setup.py): started 2024-12-11T20:28:25,589 Destination directory: /tmp/pip-wheel-kov4r4qr 2024-12-11T20:28:25,589 Running command python setup.py bdist_wheel 2024-12-11T20:28:26,039 Running setup... 2024-12-11T20:28:26,603 running bdist_wheel 2024-12-11T20:28:26,733 running build 2024-12-11T20:28:26,733 running build_py 2024-12-11T20:28:26,764 creating build/lib/CLASV 2024-12-11T20:28:26,766 copying CLASV/install_nextclade.py -> build/lib/CLASV 2024-12-11T20:28:26,770 copying CLASV/__init__.py -> build/lib/CLASV 2024-12-11T20:28:26,771 copying CLASV/pipeline.py -> build/lib/CLASV 2024-12-11T20:28:26,773 copying CLASV/core.py -> build/lib/CLASV 2024-12-11T20:28:26,776 copying CLASV/cli.py -> build/lib/CLASV 2024-12-11T20:28:26,777 running egg_info 2024-12-11T20:28:26,808 writing CLASV.egg-info/PKG-INFO 2024-12-11T20:28:26,814 writing dependency_links to CLASV.egg-info/dependency_links.txt 2024-12-11T20:28:26,816 writing entry points to CLASV.egg-info/entry_points.txt 2024-12-11T20:28:26,818 writing requirements to CLASV.egg-info/requires.txt 2024-12-11T20:28:26,820 writing top-level names to CLASV.egg-info/top_level.txt 2024-12-11T20:28:26,851 reading manifest file 'CLASV.egg-info/SOURCES.txt' 2024-12-11T20:28:26,855 reading manifest template 'MANIFEST.in' 2024-12-11T20:28:26,856 warning: no files found matching 'CLASV/config/config.yaml' 2024-12-11T20:28:26,878 warning: no files found matching '*.png' under directory 'CLASV' 2024-12-11T20:28:26,883 warning: no files found matching 'config' under directory 'CLASV' 2024-12-11T20:28:26,895 warning: no files found matching 'predictions' under directory 'CLASV' 2024-12-11T20:28:26,907 warning: no files found matching 'raw_data' under directory 'CLASV' 2024-12-11T20:28:26,920 warning: no files found matching 'results' under directory 'CLASV' 2024-12-11T20:28:26,933 warning: no files found matching 'visuals' under directory 'CLASV' 2024-12-11T20:28:26,940 adding license file 'LICENSE' 2024-12-11T20:28:26,945 writing manifest file 'CLASV.egg-info/SOURCES.txt' 2024-12-11T20:28:26,947 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.__pycache__' is absent from the `packages` configuration. 2024-12-11T20:28:26,948 !! 2024-12-11T20:28:26,949 ******************************************************************************** 2024-12-11T20:28:26,950 ############################ 2024-12-11T20:28:26,951 # Package would be ignored # 2024-12-11T20:28:26,951 ############################ 2024-12-11T20:28:26,951 Python recognizes 'CLASV.__pycache__' as an importable package[^1], 2024-12-11T20:28:26,952 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:28:26,953 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:28:26,953 package, please make sure that 'CLASV.__pycache__' is explicitly added 2024-12-11T20:28:26,954 to the `packages` configuration field. 2024-12-11T20:28:26,955 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:28:26,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:28:26,955 instead of `find_packages(...)`/`find:`). 2024-12-11T20:28:26,956 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:28:26,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:28:26,958 If you don't want 'CLASV.__pycache__' to be distributed and are 2024-12-11T20:28:26,959 already explicitly excluding 'CLASV.__pycache__' via 2024-12-11T20:28:26,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:28:26,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:28:26,960 combination with a more fine grained `package-data` configuration. 2024-12-11T20:28:26,961 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:28:26,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:28:26,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:28:26,965 even if it does not contain any `.py` files. 2024-12-11T20:28:26,965 On the other hand, currently there is no concept of package data 2024-12-11T20:28:26,966 directory, all directories are treated like packages. 2024-12-11T20:28:26,966 ******************************************************************************** 2024-12-11T20:28:26,967 !! 2024-12-11T20:28:26,968 check.warn(importable) 2024-12-11T20:28:26,969 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.config' is absent from the `packages` configuration. 2024-12-11T20:28:26,969 !! 2024-12-11T20:28:26,970 ******************************************************************************** 2024-12-11T20:28:26,971 ############################ 2024-12-11T20:28:26,971 # Package would be ignored # 2024-12-11T20:28:26,972 ############################ 2024-12-11T20:28:26,973 Python recognizes 'CLASV.config' as an importable package[^1], 2024-12-11T20:28:26,973 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:28:26,974 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:28:26,975 package, please make sure that 'CLASV.config' is explicitly added 2024-12-11T20:28:26,976 to the `packages` configuration field. 2024-12-11T20:28:26,977 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:28:26,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:28:26,978 instead of `find_packages(...)`/`find:`). 2024-12-11T20:28:26,980 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:28:26,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:28:26,982 If you don't want 'CLASV.config' to be distributed and are 2024-12-11T20:28:26,983 already explicitly excluding 'CLASV.config' via 2024-12-11T20:28:26,984 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:28:26,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:28:26,985 combination with a more fine grained `package-data` configuration. 2024-12-11T20:28:26,986 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:28:26,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:28:26,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:28:26,989 even if it does not contain any `.py` files. 2024-12-11T20:28:26,989 On the other hand, currently there is no concept of package data 2024-12-11T20:28:26,990 directory, all directories are treated like packages. 2024-12-11T20:28:26,990 ******************************************************************************** 2024-12-11T20:28:26,991 !! 2024-12-11T20:28:26,992 check.warn(importable) 2024-12-11T20:28:26,992 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.raw_data' is absent from the `packages` configuration. 2024-12-11T20:28:26,993 !! 2024-12-11T20:28:26,993 ******************************************************************************** 2024-12-11T20:28:26,994 ############################ 2024-12-11T20:28:26,994 # Package would be ignored # 2024-12-11T20:28:26,995 ############################ 2024-12-11T20:28:26,996 Python recognizes 'CLASV.raw_data' as an importable package[^1], 2024-12-11T20:28:26,996 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:28:26,998 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:28:26,998 package, please make sure that 'CLASV.raw_data' is explicitly added 2024-12-11T20:28:26,999 to the `packages` configuration field. 2024-12-11T20:28:27,001 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:28:27,001 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:28:27,002 instead of `find_packages(...)`/`find:`). 2024-12-11T20:28:27,003 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:28:27,010 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:28:27,074 If you don't want 'CLASV.raw_data' to be distributed and are 2024-12-11T20:28:27,091 already explicitly excluding 'CLASV.raw_data' via 2024-12-11T20:28:27,092 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:28:27,092 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:28:27,093 combination with a more fine grained `package-data` configuration. 2024-12-11T20:28:27,094 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:28:27,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:28:27,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:28:27,097 even if it does not contain any `.py` files. 2024-12-11T20:28:27,098 On the other hand, currently there is no concept of package data 2024-12-11T20:28:27,098 directory, all directories are treated like packages. 2024-12-11T20:28:27,099 ******************************************************************************** 2024-12-11T20:28:27,100 !! 2024-12-11T20:28:27,101 check.warn(importable) 2024-12-11T20:28:27,101 copying CLASV/predict_lineage.smk -> build/lib/CLASV 2024-12-11T20:28:27,102 copying CLASV/requirements.txt -> build/lib/CLASV 2024-12-11T20:28:27,103 creating build/lib/CLASV/__pycache__ 2024-12-11T20:28:27,103 copying CLASV/__pycache__/__init__.cpython-311.pyc -> build/lib/CLASV/__pycache__ 2024-12-11T20:28:27,104 copying CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/lib/CLASV/__pycache__ 2024-12-11T20:28:27,105 creating build/lib/CLASV/config 2024-12-11T20:28:27,105 copying CLASV/config/NC_004296.fasta -> build/lib/CLASV/config 2024-12-11T20:28:27,105 copying CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/lib/CLASV/config 2024-12-11T20:28:27,106 copying CLASV/config/configs.yaml -> build/lib/CLASV/config 2024-12-11T20:28:27,106 creating build/lib/CLASV/raw_data 2024-12-11T20:28:27,107 copying CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,107 copying CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,111 copying CLASV/raw_data/All_LASV_06_07_24.csv -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,133 copying CLASV/raw_data/All_LASV_06_07_24.fasta -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,290 copying CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,293 copying CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/lib/CLASV/raw_data 2024-12-11T20:28:27,299 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-11T20:28:27,300 !! 2024-12-11T20:28:27,301 ******************************************************************************** 2024-12-11T20:28:27,301 Please avoid running ``setup.py`` directly. 2024-12-11T20:28:27,302 Instead, use pypa/build, pypa/installer or other 2024-12-11T20:28:27,302 standards-based tools. 2024-12-11T20:28:27,303 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-11T20:28:27,304 ******************************************************************************** 2024-12-11T20:28:27,305 !! 2024-12-11T20:28:27,306 self.initialize_options() 2024-12-11T20:28:27,327 installing to build/bdist.linux-armv7l/wheel 2024-12-11T20:28:27,327 running install 2024-12-11T20:28:27,352 running install_lib 2024-12-11T20:28:27,379 creating build/bdist.linux-armv7l/wheel 2024-12-11T20:28:27,381 creating build/bdist.linux-armv7l/wheel/CLASV 2024-12-11T20:28:27,383 creating build/bdist.linux-armv7l/wheel/CLASV/config 2024-12-11T20:28:27,384 copying build/lib/CLASV/config/NC_004296.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-11T20:28:27,386 copying build/lib/CLASV/config/configs.yaml -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-11T20:28:27,388 copying build/lib/CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-11T20:28:27,546 copying build/lib/CLASV/install_nextclade.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,549 copying build/lib/CLASV/__init__.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,550 copying build/lib/CLASV/predict_lineage.smk -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,554 creating build/bdist.linux-armv7l/wheel/CLASV/raw_data 2024-12-11T20:28:27,555 copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,558 copying build/lib/CLASV/raw_data/All_LASV_06_07_24.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,580 copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,585 copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,588 copying build/lib/CLASV/raw_data/All_LASV_06_07_24.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,728 copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-11T20:28:27,734 copying build/lib/CLASV/requirements.txt -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,736 copying build/lib/CLASV/pipeline.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,737 copying build/lib/CLASV/core.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,740 creating build/bdist.linux-armv7l/wheel/CLASV/__pycache__ 2024-12-11T20:28:27,741 copying build/lib/CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__ 2024-12-11T20:28:27,743 copying build/lib/CLASV/__pycache__/__init__.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__ 2024-12-11T20:28:27,745 copying build/lib/CLASV/cli.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-11T20:28:27,746 running install_egg_info 2024-12-11T20:28:27,780 Copying CLASV.egg-info to build/bdist.linux-armv7l/wheel/./CLASV-0.1.14-py3.11.egg-info 2024-12-11T20:28:27,792 running install_scripts 2024-12-11T20:28:27,793 Installing Nextclade... 2024-12-11T20:28:27,795 Failed to install Nextclade: [Errno 2] No such file or directory: 'python' 2024-12-11T20:28:27,830 creating build/bdist.linux-armv7l/wheel/CLASV-0.1.14.dist-info/WHEEL 2024-12-11T20:28:27,832 creating '/tmp/pip-wheel-kov4r4qr/CLASV-0.1.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-11T20:28:27,835 adding 'CLASV/__init__.py' 2024-12-11T20:28:27,836 adding 'CLASV/cli.py' 2024-12-11T20:28:27,838 adding 'CLASV/core.py' 2024-12-11T20:28:27,840 adding 'CLASV/install_nextclade.py' 2024-12-11T20:28:27,841 adding 'CLASV/pipeline.py' 2024-12-11T20:28:27,842 adding 'CLASV/predict_lineage.smk' 2024-12-11T20:28:27,844 adding 'CLASV/requirements.txt' 2024-12-11T20:28:27,846 adding 'CLASV/__pycache__/__init__.cpython-311.pyc' 2024-12-11T20:28:27,848 adding 'CLASV/__pycache__/install_nextclade.cpython-311.pyc' 2024-12-11T20:28:27,850 adding 'CLASV/config/NC_004296.fasta' 2024-12-11T20:28:28,585 adding 'CLASV/config/RF_LASV_lineage_n1000_aa.joblib' 2024-12-11T20:28:28,638 adding 'CLASV/config/configs.yaml' 2024-12-11T20:28:28,641 adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.csv' 2024-12-11T20:28:28,651 adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.fasta' 2024-12-11T20:28:28,695 adding 'CLASV/raw_data/All_LASV_06_07_24.csv' 2024-12-11T20:28:31,918 adding 'CLASV/raw_data/All_LASV_06_07_24.fasta' 2024-12-11T20:28:31,979 adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.csv' 2024-12-11T20:28:32,034 adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.fasta' 2024-12-11T20:28:32,037 adding 'CLASV-0.1.14.dist-info/LICENSE' 2024-12-11T20:28:32,038 adding 'CLASV-0.1.14.dist-info/METADATA' 2024-12-11T20:28:32,039 adding 'CLASV-0.1.14.dist-info/WHEEL' 2024-12-11T20:28:32,040 adding 'CLASV-0.1.14.dist-info/entry_points.txt' 2024-12-11T20:28:32,041 adding 'CLASV-0.1.14.dist-info/top_level.txt' 2024-12-11T20:28:32,042 adding 'CLASV-0.1.14.dist-info/RECORD' 2024-12-11T20:28:32,080 removing build/bdist.linux-armv7l/wheel 2024-12-11T20:28:32,206 Building wheel for clasv (setup.py): finished with status 'done' 2024-12-11T20:28:32,242 Created wheel for clasv: filename=CLASV-0.1.14-py3-none-any.whl size=3457633 sha256=df7ac2bc8947ae60805237e722746c632985fb9714d7ad952d4b300baed27f86 2024-12-11T20:28:32,244 Stored in directory: /tmp/pip-ephem-wheel-cache-r5okl1dg/wheels/38/b1/cc/70f3aea9eb0fa914610d619f5fe6fdccdc003f8f0f98e4110c 2024-12-11T20:28:32,257 Successfully built clasv 2024-12-11T20:28:32,350 Removed build tracker: '/tmp/pip-build-tracker-cw3u5w6d'