2024-12-15T14:52:33,069 Created temporary directory: /tmp/pip-build-tracker-ss3y1_ki
2024-12-15T14:52:33,070 Initialized build tracking at /tmp/pip-build-tracker-ss3y1_ki
2024-12-15T14:52:33,071 Created build tracker: /tmp/pip-build-tracker-ss3y1_ki
2024-12-15T14:52:33,071 Entered build tracker: /tmp/pip-build-tracker-ss3y1_ki
2024-12-15T14:52:33,072 Created temporary directory: /tmp/pip-wheel-mf81f6_b
2024-12-15T14:52:33,076 Created temporary directory: /tmp/pip-ephem-wheel-cache-tb6lwpdj
2024-12-15T14:52:33,121 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-15T14:52:33,123 2 location(s) to search for versions of clasv:
2024-12-15T14:52:33,123 * https://pypi.org/simple/clasv/
2024-12-15T14:52:33,123 * https://www.piwheels.org/simple/clasv/
2024-12-15T14:52:33,124 Fetching project page and analyzing links: https://pypi.org/simple/clasv/
2024-12-15T14:52:33,125 Getting page https://pypi.org/simple/clasv/
2024-12-15T14:52:33,126 Found index url https://pypi.org/simple/
2024-12-15T14:52:33,348 Fetched page https://pypi.org/simple/clasv/ as application/vnd.pypi.simple.v1+json
2024-12-15T14:52:33,350   Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/1a/16/db344cddef30afa227564b37850859df2be84ad92983a4e623cc6d22e358/CLASV-0.1.14-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6)
2024-12-15T14:52:33,351   Found link https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.14
2024-12-15T14:52:33,352   Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/01/a7/fb8fe230851b0d19d0c9df27bb7b096c9c7b0d25d999999213f7fb663bea/CLASV-0.1.15-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6)
2024-12-15T14:52:33,353   Found link https://files.pythonhosted.org/packages/04/88/bb8ba072c5ce1e54697cb4049212cf1520972dadbdb0af3e65bd0caf6307/clasv-0.1.15.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.15
2024-12-15T14:52:33,354   Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/2f/01/e66257efeac8ad400c86e8f5041ff0b77719174c6cbbb2910eb7e3f04a7e/CLASV-0.1.16-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6)
2024-12-15T14:52:33,355   Found link https://files.pythonhosted.org/packages/f3/ee/d74f763c762dc4eb56f3f4ac5e6fbde566c9d391e6156bfaabce4cc769ed/clasv-0.1.16.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.16
2024-12-15T14:52:33,356 Fetching project page and analyzing links: https://www.piwheels.org/simple/clasv/
2024-12-15T14:52:33,356 Getting page https://www.piwheels.org/simple/clasv/
2024-12-15T14:52:33,357 Found index url https://www.piwheels.org/simple/
2024-12-15T14:52:33,526 Fetched page https://www.piwheels.org/simple/clasv/ as text/html
2024-12-15T14:52:33,528   Skipping link: No binaries permitted for clasv: https://www.piwheels.org/simple/clasv/CLASV-0.1.14-py3-none-any.whl#sha256=df7ac2bc8947ae60805237e722746c632985fb9714d7ad952d4b300baed27f86 (from https://www.piwheels.org/simple/clasv/) (requires-python:>=3.6)
2024-12-15T14:52:33,528 Skipping link: not a file: https://www.piwheels.org/simple/clasv/
2024-12-15T14:52:33,529 Skipping link: not a file: https://pypi.org/simple/clasv/
2024-12-15T14:52:33,548 Given no hashes to check 1 links for project 'clasv': discarding no candidates
2024-12-15T14:52:33,550 Collecting clasv==0.1.15
2024-12-15T14:52:33,552   Created temporary directory: /tmp/pip-unpack-545awjn_
2024-12-15T14:52:33,780   Downloading clasv-0.1.15.tar.gz (2.9 MB)
2024-12-15T14:52:34,816   Added clasv==0.1.15 from https://files.pythonhosted.org/packages/04/88/bb8ba072c5ce1e54697cb4049212cf1520972dadbdb0af3e65bd0caf6307/clasv-0.1.15.tar.gz to build tracker '/tmp/pip-build-tracker-ss3y1_ki'
2024-12-15T14:52:34,818   Running setup.py (path:/tmp/pip-wheel-mf81f6_b/clasv_4b8fae6e0acd458ebd6fc1b03aaee5dc/setup.py) egg_info for package clasv
2024-12-15T14:52:34,819   Created temporary directory: /tmp/pip-pip-egg-info-r9kvv2x4
2024-12-15T14:52:34,820   Preparing metadata (setup.py): started
2024-12-15T14:52:34,821   Running command python setup.py egg_info
2024-12-15T14:52:35,926   Running setup...
2024-12-15T14:52:35,927   running egg_info
2024-12-15T14:52:35,953   creating /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info
2024-12-15T14:52:35,955   writing /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/PKG-INFO
2024-12-15T14:52:35,959   writing dependency_links to /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/dependency_links.txt
2024-12-15T14:52:35,961   writing entry points to /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/entry_points.txt
2024-12-15T14:52:35,963   writing requirements to /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/requires.txt
2024-12-15T14:52:35,964   writing top-level names to /tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/top_level.txt
2024-12-15T14:52:35,966   writing manifest file '/tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/SOURCES.txt'
2024-12-15T14:52:36,059   reading manifest file '/tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/SOURCES.txt'
2024-12-15T14:52:36,061   reading manifest template 'MANIFEST.in'
2024-12-15T14:52:36,062   warning: no files found matching 'CLASV/config/config.yaml'
2024-12-15T14:52:36,088   warning: no files found matching '*.png' under directory 'CLASV'
2024-12-15T14:52:36,093   warning: no files found matching 'config' under directory 'CLASV'
2024-12-15T14:52:36,108   warning: no files found matching 'predictions' under directory 'CLASV'
2024-12-15T14:52:36,121   warning: no files found matching 'raw_data' under directory 'CLASV'
2024-12-15T14:52:36,135   warning: no files found matching 'results' under directory 'CLASV'
2024-12-15T14:52:36,149   warning: no files found matching 'visuals' under directory 'CLASV'
2024-12-15T14:52:36,158   adding license file 'LICENSE'
2024-12-15T14:52:36,162   writing manifest file '/tmp/pip-pip-egg-info-r9kvv2x4/CLASV.egg-info/SOURCES.txt'
2024-12-15T14:52:36,270   Preparing metadata (setup.py): finished with status 'done'
2024-12-15T14:52:36,276   Source in /tmp/pip-wheel-mf81f6_b/clasv_4b8fae6e0acd458ebd6fc1b03aaee5dc has version 0.1.15, which satisfies requirement clasv==0.1.15 from https://files.pythonhosted.org/packages/04/88/bb8ba072c5ce1e54697cb4049212cf1520972dadbdb0af3e65bd0caf6307/clasv-0.1.15.tar.gz
2024-12-15T14:52:36,277   Removed clasv==0.1.15 from https://files.pythonhosted.org/packages/04/88/bb8ba072c5ce1e54697cb4049212cf1520972dadbdb0af3e65bd0caf6307/clasv-0.1.15.tar.gz from build tracker '/tmp/pip-build-tracker-ss3y1_ki'
2024-12-15T14:52:36,297 Created temporary directory: /tmp/pip-unpack-acocmrof
2024-12-15T14:52:36,298 Created temporary directory: /tmp/pip-unpack-hmcwkob6
2024-12-15T14:52:36,299 Building wheels for collected packages: clasv
2024-12-15T14:52:36,303   Created temporary directory: /tmp/pip-wheel-oy_6356m
2024-12-15T14:52:36,303   Building wheel for clasv (setup.py): started
2024-12-15T14:52:36,305   Destination directory: /tmp/pip-wheel-oy_6356m
2024-12-15T14:52:36,305   Running command python setup.py bdist_wheel
2024-12-15T14:52:36,766   Running setup...
2024-12-15T14:52:37,396   running bdist_wheel
2024-12-15T14:52:37,530   running build
2024-12-15T14:52:37,531   running build_py
2024-12-15T14:52:37,561   creating build/lib/CLASV
2024-12-15T14:52:37,563   copying CLASV/cli.py -> build/lib/CLASV
2024-12-15T14:52:37,566   copying CLASV/install_nextclade.py -> build/lib/CLASV
2024-12-15T14:52:37,569   copying CLASV/core.py -> build/lib/CLASV
2024-12-15T14:52:37,572   copying CLASV/__init__.py -> build/lib/CLASV
2024-12-15T14:52:37,573   copying CLASV/pipeline.py -> build/lib/CLASV
2024-12-15T14:52:37,575   copying CLASV/install_seqkit.py -> build/lib/CLASV
2024-12-15T14:52:37,577   running egg_info
2024-12-15T14:52:37,608   writing CLASV.egg-info/PKG-INFO
2024-12-15T14:52:37,613   writing dependency_links to CLASV.egg-info/dependency_links.txt
2024-12-15T14:52:37,614   writing entry points to CLASV.egg-info/entry_points.txt
2024-12-15T14:52:37,617   writing requirements to CLASV.egg-info/requires.txt
2024-12-15T14:52:37,618   writing top-level names to CLASV.egg-info/top_level.txt
2024-12-15T14:52:37,651   reading manifest file 'CLASV.egg-info/SOURCES.txt'
2024-12-15T14:52:37,654   reading manifest template 'MANIFEST.in'
2024-12-15T14:52:37,655   warning: no files found matching 'CLASV/config/config.yaml'
2024-12-15T14:52:37,680   warning: no files found matching '*.png' under directory 'CLASV'
2024-12-15T14:52:37,685   warning: no files found matching 'config' under directory 'CLASV'
2024-12-15T14:52:37,698   warning: no files found matching 'predictions' under directory 'CLASV'
2024-12-15T14:52:37,712   warning: no files found matching 'raw_data' under directory 'CLASV'
2024-12-15T14:52:37,726   warning: no files found matching 'results' under directory 'CLASV'
2024-12-15T14:52:37,739   warning: no files found matching 'visuals' under directory 'CLASV'
2024-12-15T14:52:37,748   adding license file 'LICENSE'
2024-12-15T14:52:37,753   writing manifest file 'CLASV.egg-info/SOURCES.txt'
2024-12-15T14:52:37,755   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.__pycache__' is absent from the `packages` configuration.
2024-12-15T14:52:37,756   !!

2024-12-15T14:52:37,757           ********************************************************************************
2024-12-15T14:52:37,757           ############################
2024-12-15T14:52:37,758           # Package would be ignored #
2024-12-15T14:52:37,758           ############################
2024-12-15T14:52:37,759           Python recognizes 'CLASV.__pycache__' as an importable package[^1],
2024-12-15T14:52:37,759           but it is absent from setuptools' `packages` configuration.

2024-12-15T14:52:37,760           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-15T14:52:37,761           package, please make sure that 'CLASV.__pycache__' is explicitly added
2024-12-15T14:52:37,761           to the `packages` configuration field.

2024-12-15T14:52:37,762           Alternatively, you can also rely on setuptools' discovery methods
2024-12-15T14:52:37,763           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-15T14:52:37,763           instead of `find_packages(...)`/`find:`).

2024-12-15T14:52:37,765           You can read more about "package discovery" on setuptools documentation page:

2024-12-15T14:52:37,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-15T14:52:37,767           If you don't want 'CLASV.__pycache__' to be distributed and are
2024-12-15T14:52:37,767           already explicitly excluding 'CLASV.__pycache__' via
2024-12-15T14:52:37,768           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-15T14:52:37,769           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-15T14:52:37,769           combination with a more fine grained `package-data` configuration.

2024-12-15T14:52:37,770           You can read more about "package data files" on setuptools documentation page:

2024-12-15T14:52:37,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-15T14:52:37,773           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-15T14:52:37,773                 even if it does not contain any `.py` files.
2024-12-15T14:52:37,774                 On the other hand, currently there is no concept of package data
2024-12-15T14:52:37,774                 directory, all directories are treated like packages.
2024-12-15T14:52:37,775           ********************************************************************************

2024-12-15T14:52:37,776   !!
2024-12-15T14:52:37,777     check.warn(importable)
2024-12-15T14:52:37,777   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.config' is absent from the `packages` configuration.
2024-12-15T14:52:37,778   !!

2024-12-15T14:52:37,779           ********************************************************************************
2024-12-15T14:52:37,779           ############################
2024-12-15T14:52:37,780           # Package would be ignored #
2024-12-15T14:52:37,781           ############################
2024-12-15T14:52:37,781           Python recognizes 'CLASV.config' as an importable package[^1],
2024-12-15T14:52:37,782           but it is absent from setuptools' `packages` configuration.

2024-12-15T14:52:37,783           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-15T14:52:37,783           package, please make sure that 'CLASV.config' is explicitly added
2024-12-15T14:52:37,784           to the `packages` configuration field.

2024-12-15T14:52:37,784           Alternatively, you can also rely on setuptools' discovery methods
2024-12-15T14:52:37,785           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-15T14:52:37,785           instead of `find_packages(...)`/`find:`).

2024-12-15T14:52:37,786           You can read more about "package discovery" on setuptools documentation page:

2024-12-15T14:52:37,787           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-15T14:52:37,794           If you don't want 'CLASV.config' to be distributed and are
2024-12-15T14:52:37,795           already explicitly excluding 'CLASV.config' via
2024-12-15T14:52:37,795           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-15T14:52:37,796           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-15T14:52:37,796           combination with a more fine grained `package-data` configuration.

2024-12-15T14:52:37,797           You can read more about "package data files" on setuptools documentation page:

2024-12-15T14:52:37,799           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-15T14:52:37,800           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-15T14:52:37,801                 even if it does not contain any `.py` files.
2024-12-15T14:52:37,802                 On the other hand, currently there is no concept of package data
2024-12-15T14:52:37,802                 directory, all directories are treated like packages.
2024-12-15T14:52:37,803           ********************************************************************************

2024-12-15T14:52:37,804   !!
2024-12-15T14:52:37,805     check.warn(importable)
2024-12-15T14:52:37,806   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.raw_data' is absent from the `packages` configuration.
2024-12-15T14:52:37,806   !!

2024-12-15T14:52:37,808           ********************************************************************************
2024-12-15T14:52:37,808           ############################
2024-12-15T14:52:37,809           # Package would be ignored #
2024-12-15T14:52:37,810           ############################
2024-12-15T14:52:37,810           Python recognizes 'CLASV.raw_data' as an importable package[^1],
2024-12-15T14:52:37,811           but it is absent from setuptools' `packages` configuration.

2024-12-15T14:52:37,812           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-15T14:52:37,813           package, please make sure that 'CLASV.raw_data' is explicitly added
2024-12-15T14:52:37,813           to the `packages` configuration field.

2024-12-15T14:52:37,814           Alternatively, you can also rely on setuptools' discovery methods
2024-12-15T14:52:37,815           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-15T14:52:37,815           instead of `find_packages(...)`/`find:`).

2024-12-15T14:52:37,817           You can read more about "package discovery" on setuptools documentation page:

2024-12-15T14:52:37,818           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-15T14:52:37,819           If you don't want 'CLASV.raw_data' to be distributed and are
2024-12-15T14:52:37,820           already explicitly excluding 'CLASV.raw_data' via
2024-12-15T14:52:37,820           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-15T14:52:37,821           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-15T14:52:37,821           combination with a more fine grained `package-data` configuration.

2024-12-15T14:52:37,822           You can read more about "package data files" on setuptools documentation page:

2024-12-15T14:52:37,836           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-15T14:52:37,894           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-15T14:52:37,908                 even if it does not contain any `.py` files.
2024-12-15T14:52:37,909                 On the other hand, currently there is no concept of package data
2024-12-15T14:52:37,909                 directory, all directories are treated like packages.
2024-12-15T14:52:37,909           ********************************************************************************

2024-12-15T14:52:37,910   !!
2024-12-15T14:52:37,910     check.warn(importable)
2024-12-15T14:52:37,911   copying CLASV/.DS_Store -> build/lib/CLASV
2024-12-15T14:52:37,911   copying CLASV/predict_lineage.smk -> build/lib/CLASV
2024-12-15T14:52:37,912   copying CLASV/requirements.txt -> build/lib/CLASV
2024-12-15T14:52:37,912   creating build/lib/CLASV/__pycache__
2024-12-15T14:52:37,913   copying CLASV/__pycache__/__init__.cpython-311.pyc -> build/lib/CLASV/__pycache__
2024-12-15T14:52:37,913   copying CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/lib/CLASV/__pycache__
2024-12-15T14:52:37,914   copying CLASV/__pycache__/install_seqkit.cpython-311.pyc -> build/lib/CLASV/__pycache__
2024-12-15T14:52:37,914   creating build/lib/CLASV/config
2024-12-15T14:52:37,914   copying CLASV/config/NC_004296.fasta -> build/lib/CLASV/config
2024-12-15T14:52:37,915   copying CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/lib/CLASV/config
2024-12-15T14:52:37,915   copying CLASV/config/configs.yaml -> build/lib/CLASV/config
2024-12-15T14:52:37,916   creating build/lib/CLASV/raw_data
2024-12-15T14:52:37,917   copying CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/lib/CLASV/raw_data
2024-12-15T14:52:37,921   copying CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/lib/CLASV/raw_data
2024-12-15T14:52:37,926   copying CLASV/raw_data/All_LASV_06_07_24.csv -> build/lib/CLASV/raw_data
2024-12-15T14:52:37,947   copying CLASV/raw_data/All_LASV_06_07_24.fasta -> build/lib/CLASV/raw_data
2024-12-15T14:52:38,107   copying CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/lib/CLASV/raw_data
2024-12-15T14:52:38,111   copying CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/lib/CLASV/raw_data
2024-12-15T14:52:38,119   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-15T14:52:38,119   !!

2024-12-15T14:52:38,121           ********************************************************************************
2024-12-15T14:52:38,121           Please avoid running ``setup.py`` directly.
2024-12-15T14:52:38,122           Instead, use pypa/build, pypa/installer or other
2024-12-15T14:52:38,123           standards-based tools.

2024-12-15T14:52:38,124           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-15T14:52:38,124           ********************************************************************************

2024-12-15T14:52:38,126   !!
2024-12-15T14:52:38,126     self.initialize_options()
2024-12-15T14:52:38,147   installing to build/bdist.linux-armv7l/wheel
2024-12-15T14:52:38,148   running install
2024-12-15T14:52:38,172   running install_lib
2024-12-15T14:52:38,200   creating build/bdist.linux-armv7l/wheel
2024-12-15T14:52:38,202   creating build/bdist.linux-armv7l/wheel/CLASV
2024-12-15T14:52:38,204   creating build/bdist.linux-armv7l/wheel/CLASV/raw_data
2024-12-15T14:52:38,205   copying build/lib/CLASV/raw_data/All_LASV_06_07_24.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,227   copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,229   copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,235   copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,239   copying build/lib/CLASV/raw_data/All_LASV_06_07_24.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,376   copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data
2024-12-15T14:52:38,380   creating build/bdist.linux-armv7l/wheel/CLASV/__pycache__
2024-12-15T14:52:38,381   copying build/lib/CLASV/__pycache__/__init__.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__
2024-12-15T14:52:38,383   copying build/lib/CLASV/__pycache__/install_seqkit.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__
2024-12-15T14:52:38,385   copying build/lib/CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__
2024-12-15T14:52:38,387   copying build/lib/CLASV/cli.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,389   copying build/lib/CLASV/install_nextclade.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,391   copying build/lib/CLASV/.DS_Store -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,394   copying build/lib/CLASV/core.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,396   copying build/lib/CLASV/__init__.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,398   creating build/bdist.linux-armv7l/wheel/CLASV/config
2024-12-15T14:52:38,399   copying build/lib/CLASV/config/NC_004296.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/config
2024-12-15T14:52:38,401   copying build/lib/CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/bdist.linux-armv7l/wheel/./CLASV/config
2024-12-15T14:52:38,529   copying build/lib/CLASV/config/configs.yaml -> build/bdist.linux-armv7l/wheel/./CLASV/config
2024-12-15T14:52:38,531   copying build/lib/CLASV/pipeline.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,533   copying build/lib/CLASV/predict_lineage.smk -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,535   copying build/lib/CLASV/install_seqkit.py -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,538   copying build/lib/CLASV/requirements.txt -> build/bdist.linux-armv7l/wheel/./CLASV
2024-12-15T14:52:38,540   running install_egg_info
2024-12-15T14:52:38,575   Copying CLASV.egg-info to build/bdist.linux-armv7l/wheel/./CLASV-0.1.15-py3.11.egg-info
2024-12-15T14:52:38,587   running install_scripts
2024-12-15T14:52:38,587   Installing Nextclade...
2024-12-15T14:52:38,589   Failed to install Nextclade: [Errno 2] No such file or directory: 'python'
2024-12-15T14:52:38,590   Installing Seqkit...
2024-12-15T14:52:38,591   Failed to install Seqkit: [Errno 2] No such file or directory: 'python'
2024-12-15T14:52:38,627   creating build/bdist.linux-armv7l/wheel/CLASV-0.1.15.dist-info/WHEEL
2024-12-15T14:52:38,630   creating '/tmp/pip-wheel-oy_6356m/CLASV-0.1.15-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-15T14:52:38,632   adding 'CLASV/.DS_Store'
2024-12-15T14:52:38,634   adding 'CLASV/__init__.py'
2024-12-15T14:52:38,636   adding 'CLASV/cli.py'
2024-12-15T14:52:38,638   adding 'CLASV/core.py'
2024-12-15T14:52:38,640   adding 'CLASV/install_nextclade.py'
2024-12-15T14:52:38,642   adding 'CLASV/install_seqkit.py'
2024-12-15T14:52:38,644   adding 'CLASV/pipeline.py'
2024-12-15T14:52:38,646   adding 'CLASV/predict_lineage.smk'
2024-12-15T14:52:38,648   adding 'CLASV/requirements.txt'
2024-12-15T14:52:38,650   adding 'CLASV/__pycache__/__init__.cpython-311.pyc'
2024-12-15T14:52:38,652   adding 'CLASV/__pycache__/install_nextclade.cpython-311.pyc'
2024-12-15T14:52:38,654   adding 'CLASV/__pycache__/install_seqkit.cpython-311.pyc'
2024-12-15T14:52:38,656   adding 'CLASV/config/NC_004296.fasta'
2024-12-15T14:52:39,398   adding 'CLASV/config/RF_LASV_lineage_n1000_aa.joblib'
2024-12-15T14:52:39,451   adding 'CLASV/config/configs.yaml'
2024-12-15T14:52:39,455   adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.csv'
2024-12-15T14:52:39,465   adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.fasta'
2024-12-15T14:52:39,509   adding 'CLASV/raw_data/All_LASV_06_07_24.csv'
2024-12-15T14:52:42,733   adding 'CLASV/raw_data/All_LASV_06_07_24.fasta'
2024-12-15T14:52:43,010   adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.csv'
2024-12-15T14:52:43,524   adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.fasta'
2024-12-15T14:52:43,825   adding 'CLASV-0.1.15.dist-info/LICENSE'
2024-12-15T14:52:43,975   adding 'CLASV-0.1.15.dist-info/METADATA'
2024-12-15T14:52:44,173   adding 'CLASV-0.1.15.dist-info/WHEEL'
2024-12-15T14:52:44,238   adding 'CLASV-0.1.15.dist-info/entry_points.txt'
2024-12-15T14:52:44,310   adding 'CLASV-0.1.15.dist-info/top_level.txt'
2024-12-15T14:52:44,312   adding 'CLASV-0.1.15.dist-info/RECORD'
2024-12-15T14:52:44,400   removing build/bdist.linux-armv7l/wheel
2024-12-15T14:52:44,528   Building wheel for clasv (setup.py): finished with status 'done'
2024-12-15T14:52:44,565   Created wheel for clasv: filename=CLASV-0.1.15-py3-none-any.whl size=3464658 sha256=e0e432f07cc0268e603ea2fc23ee116450d1514e6a74a467526a515fd1ed177d
2024-12-15T14:52:44,566   Stored in directory: /tmp/pip-ephem-wheel-cache-tb6lwpdj/wheels/7b/6b/81/df3b407df5ed4738b4aa1394beb58771e63bab59b0d2340bf7
2024-12-15T14:52:44,579 Successfully built clasv
2024-12-15T14:52:44,663 Removed build tracker: '/tmp/pip-build-tracker-ss3y1_ki'