2024-12-15T15:55:04,135 Created temporary directory: /tmp/pip-build-tracker-sn_5eetb 2024-12-15T15:55:04,136 Initialized build tracking at /tmp/pip-build-tracker-sn_5eetb 2024-12-15T15:55:04,137 Created build tracker: /tmp/pip-build-tracker-sn_5eetb 2024-12-15T15:55:04,137 Entered build tracker: /tmp/pip-build-tracker-sn_5eetb 2024-12-15T15:55:04,138 Created temporary directory: /tmp/pip-wheel-ey9esucb 2024-12-15T15:55:04,142 Created temporary directory: /tmp/pip-ephem-wheel-cache-9q6i2_la 2024-12-15T15:55:04,188 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-15T15:55:04,191 2 location(s) to search for versions of clasv: 2024-12-15T15:55:04,191 * https://pypi.org/simple/clasv/ 2024-12-15T15:55:04,191 * https://www.piwheels.org/simple/clasv/ 2024-12-15T15:55:04,192 Fetching project page and analyzing links: https://pypi.org/simple/clasv/ 2024-12-15T15:55:04,193 Getting page https://pypi.org/simple/clasv/ 2024-12-15T15:55:04,194 Found index url https://pypi.org/simple/ 2024-12-15T15:55:04,339 Fetched page https://pypi.org/simple/clasv/ as application/vnd.pypi.simple.v1+json 2024-12-15T15:55:04,342 Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/1a/16/db344cddef30afa227564b37850859df2be84ad92983a4e623cc6d22e358/CLASV-0.1.14-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6) 2024-12-15T15:55:04,343 Found link https://files.pythonhosted.org/packages/1f/ea/a546746ef065df29e7d448b541720187f00fb3d6313c131edfce2458dcfb/clasv-0.1.14.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.14 2024-12-15T15:55:04,343 Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/01/a7/fb8fe230851b0d19d0c9df27bb7b096c9c7b0d25d999999213f7fb663bea/CLASV-0.1.15-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6) 2024-12-15T15:55:04,344 Found link https://files.pythonhosted.org/packages/04/88/bb8ba072c5ce1e54697cb4049212cf1520972dadbdb0af3e65bd0caf6307/clasv-0.1.15.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.15 2024-12-15T15:55:04,345 Skipping link: No binaries permitted for clasv: https://files.pythonhosted.org/packages/2f/01/e66257efeac8ad400c86e8f5041ff0b77719174c6cbbb2910eb7e3f04a7e/CLASV-0.1.16-py3-none-any.whl (from https://pypi.org/simple/clasv/) (requires-python:>=3.6) 2024-12-15T15:55:04,346 Found link https://files.pythonhosted.org/packages/f3/ee/d74f763c762dc4eb56f3f4ac5e6fbde566c9d391e6156bfaabce4cc769ed/clasv-0.1.16.tar.gz (from https://pypi.org/simple/clasv/) (requires-python:>=3.6), version: 0.1.16 2024-12-15T15:55:04,347 Fetching project page and analyzing links: https://www.piwheels.org/simple/clasv/ 2024-12-15T15:55:04,348 Getting page https://www.piwheels.org/simple/clasv/ 2024-12-15T15:55:04,349 Found index url https://www.piwheels.org/simple/ 2024-12-15T15:55:04,522 Fetched page https://www.piwheels.org/simple/clasv/ as text/html 2024-12-15T15:55:04,524 Skipping link: No binaries permitted for clasv: https://www.piwheels.org/simple/clasv/CLASV-0.1.15-py3-none-any.whl#sha256=e0e432f07cc0268e603ea2fc23ee116450d1514e6a74a467526a515fd1ed177d (from https://www.piwheels.org/simple/clasv/) (requires-python:>=3.6) 2024-12-15T15:55:04,525 Skipping link: No binaries permitted for clasv: https://www.piwheels.org/simple/clasv/CLASV-0.1.14-py3-none-any.whl#sha256=df7ac2bc8947ae60805237e722746c632985fb9714d7ad952d4b300baed27f86 (from https://www.piwheels.org/simple/clasv/) (requires-python:>=3.6) 2024-12-15T15:55:04,526 Skipping link: not a file: https://www.piwheels.org/simple/clasv/ 2024-12-15T15:55:04,526 Skipping link: not a file: https://pypi.org/simple/clasv/ 2024-12-15T15:55:04,545 Given no hashes to check 1 links for project 'clasv': discarding no candidates 2024-12-15T15:55:04,547 Collecting clasv==0.1.16 2024-12-15T15:55:04,550 Created temporary directory: /tmp/pip-unpack-pxeest5b 2024-12-15T15:55:04,771 Downloading clasv-0.1.16.tar.gz (2.9 MB) 2024-12-15T15:55:05,821 Added clasv==0.1.16 from https://files.pythonhosted.org/packages/f3/ee/d74f763c762dc4eb56f3f4ac5e6fbde566c9d391e6156bfaabce4cc769ed/clasv-0.1.16.tar.gz to build tracker '/tmp/pip-build-tracker-sn_5eetb' 2024-12-15T15:55:05,823 Running setup.py (path:/tmp/pip-wheel-ey9esucb/clasv_0f9cad9f34104345a5b31c90d430f567/setup.py) egg_info for package clasv 2024-12-15T15:55:05,824 Created temporary directory: /tmp/pip-pip-egg-info-b72njj4w 2024-12-15T15:55:05,825 Preparing metadata (setup.py): started 2024-12-15T15:55:05,826 Running command python setup.py egg_info 2024-12-15T15:55:06,915 Running setup... 2024-12-15T15:55:06,915 running egg_info 2024-12-15T15:55:06,942 creating /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info 2024-12-15T15:55:06,943 writing /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/PKG-INFO 2024-12-15T15:55:06,948 writing dependency_links to /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/dependency_links.txt 2024-12-15T15:55:06,949 writing entry points to /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/entry_points.txt 2024-12-15T15:55:06,952 writing requirements to /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/requires.txt 2024-12-15T15:55:06,953 writing top-level names to /tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/top_level.txt 2024-12-15T15:55:06,954 writing manifest file '/tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/SOURCES.txt' 2024-12-15T15:55:07,046 reading manifest file '/tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/SOURCES.txt' 2024-12-15T15:55:07,047 reading manifest template 'MANIFEST.in' 2024-12-15T15:55:07,049 warning: no files found matching 'CLASV/config/config.yaml' 2024-12-15T15:55:07,078 warning: no files found matching '*.png' under directory 'CLASV' 2024-12-15T15:55:07,084 warning: no files found matching 'config' under directory 'CLASV' 2024-12-15T15:55:07,099 warning: no files found matching 'predictions' under directory 'CLASV' 2024-12-15T15:55:07,114 warning: no files found matching 'raw_data' under directory 'CLASV' 2024-12-15T15:55:07,129 warning: no files found matching 'results' under directory 'CLASV' 2024-12-15T15:55:07,144 warning: no files found matching 'visuals' under directory 'CLASV' 2024-12-15T15:55:07,154 adding license file 'LICENSE' 2024-12-15T15:55:07,158 writing manifest file '/tmp/pip-pip-egg-info-b72njj4w/CLASV.egg-info/SOURCES.txt' 2024-12-15T15:55:07,267 Preparing metadata (setup.py): finished with status 'done' 2024-12-15T15:55:07,273 Source in /tmp/pip-wheel-ey9esucb/clasv_0f9cad9f34104345a5b31c90d430f567 has version 0.1.16, which satisfies requirement clasv==0.1.16 from https://files.pythonhosted.org/packages/f3/ee/d74f763c762dc4eb56f3f4ac5e6fbde566c9d391e6156bfaabce4cc769ed/clasv-0.1.16.tar.gz 2024-12-15T15:55:07,273 Removed clasv==0.1.16 from https://files.pythonhosted.org/packages/f3/ee/d74f763c762dc4eb56f3f4ac5e6fbde566c9d391e6156bfaabce4cc769ed/clasv-0.1.16.tar.gz from build tracker '/tmp/pip-build-tracker-sn_5eetb' 2024-12-15T15:55:07,294 Created temporary directory: /tmp/pip-unpack-3q6ftlqc 2024-12-15T15:55:07,295 Created temporary directory: /tmp/pip-unpack-zhj3ruy5 2024-12-15T15:55:07,296 Building wheels for collected packages: clasv 2024-12-15T15:55:07,300 Created temporary directory: /tmp/pip-wheel-e28ljbj4 2024-12-15T15:55:07,300 Building wheel for clasv (setup.py): started 2024-12-15T15:55:07,302 Destination directory: /tmp/pip-wheel-e28ljbj4 2024-12-15T15:55:07,302 Running command python setup.py bdist_wheel 2024-12-15T15:55:07,753 Running setup... 2024-12-15T15:55:08,335 running bdist_wheel 2024-12-15T15:55:08,467 running build 2024-12-15T15:55:08,468 running build_py 2024-12-15T15:55:08,498 creating build/lib/CLASV 2024-12-15T15:55:08,500 copying CLASV/install_nextclade.py -> build/lib/CLASV 2024-12-15T15:55:08,503 copying CLASV/__init__.py -> build/lib/CLASV 2024-12-15T15:55:08,505 copying CLASV/install_seqkit.py -> build/lib/CLASV 2024-12-15T15:55:08,507 copying CLASV/cli.py -> build/lib/CLASV 2024-12-15T15:55:08,509 copying CLASV/core.py -> build/lib/CLASV 2024-12-15T15:55:08,511 copying CLASV/pipeline.py -> build/lib/CLASV 2024-12-15T15:55:08,513 running egg_info 2024-12-15T15:55:08,544 writing CLASV.egg-info/PKG-INFO 2024-12-15T15:55:08,549 writing dependency_links to CLASV.egg-info/dependency_links.txt 2024-12-15T15:55:08,550 writing entry points to CLASV.egg-info/entry_points.txt 2024-12-15T15:55:08,553 writing requirements to CLASV.egg-info/requires.txt 2024-12-15T15:55:08,554 writing top-level names to CLASV.egg-info/top_level.txt 2024-12-15T15:55:08,586 reading manifest file 'CLASV.egg-info/SOURCES.txt' 2024-12-15T15:55:08,590 reading manifest template 'MANIFEST.in' 2024-12-15T15:55:08,591 warning: no files found matching 'CLASV/config/config.yaml' 2024-12-15T15:55:08,616 warning: no files found matching '*.png' under directory 'CLASV' 2024-12-15T15:55:08,621 warning: no files found matching 'config' under directory 'CLASV' 2024-12-15T15:55:08,634 warning: no files found matching 'predictions' under directory 'CLASV' 2024-12-15T15:55:08,646 warning: no files found matching 'raw_data' under directory 'CLASV' 2024-12-15T15:55:08,660 warning: no files found matching 'results' under directory 'CLASV' 2024-12-15T15:55:08,673 warning: no files found matching 'visuals' under directory 'CLASV' 2024-12-15T15:55:08,681 adding license file 'LICENSE' 2024-12-15T15:55:08,686 writing manifest file 'CLASV.egg-info/SOURCES.txt' 2024-12-15T15:55:08,688 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.__pycache__' is absent from the `packages` configuration. 2024-12-15T15:55:08,689 !! 2024-12-15T15:55:08,690 ******************************************************************************** 2024-12-15T15:55:08,690 ############################ 2024-12-15T15:55:08,691 # Package would be ignored # 2024-12-15T15:55:08,691 ############################ 2024-12-15T15:55:08,692 Python recognizes 'CLASV.__pycache__' as an importable package[^1], 2024-12-15T15:55:08,692 but it is absent from setuptools' `packages` configuration. 2024-12-15T15:55:08,693 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-15T15:55:08,694 package, please make sure that 'CLASV.__pycache__' is explicitly added 2024-12-15T15:55:08,694 to the `packages` configuration field. 2024-12-15T15:55:08,695 Alternatively, you can also rely on setuptools' discovery methods 2024-12-15T15:55:08,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-15T15:55:08,696 instead of `find_packages(...)`/`find:`). 2024-12-15T15:55:08,698 You can read more about "package discovery" on setuptools documentation page: 2024-12-15T15:55:08,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-15T15:55:08,699 If you don't want 'CLASV.__pycache__' to be distributed and are 2024-12-15T15:55:08,700 already explicitly excluding 'CLASV.__pycache__' via 2024-12-15T15:55:08,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-15T15:55:08,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-15T15:55:08,702 combination with a more fine grained `package-data` configuration. 2024-12-15T15:55:08,703 You can read more about "package data files" on setuptools documentation page: 2024-12-15T15:55:08,704 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-15T15:55:08,705 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-15T15:55:08,706 even if it does not contain any `.py` files. 2024-12-15T15:55:08,706 On the other hand, currently there is no concept of package data 2024-12-15T15:55:08,707 directory, all directories are treated like packages. 2024-12-15T15:55:08,707 ******************************************************************************** 2024-12-15T15:55:08,709 !! 2024-12-15T15:55:08,709 check.warn(importable) 2024-12-15T15:55:08,710 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.config' is absent from the `packages` configuration. 2024-12-15T15:55:08,710 !! 2024-12-15T15:55:08,711 ******************************************************************************** 2024-12-15T15:55:08,712 ############################ 2024-12-15T15:55:08,712 # Package would be ignored # 2024-12-15T15:55:08,713 ############################ 2024-12-15T15:55:08,713 Python recognizes 'CLASV.config' as an importable package[^1], 2024-12-15T15:55:08,713 but it is absent from setuptools' `packages` configuration. 2024-12-15T15:55:08,714 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-15T15:55:08,715 package, please make sure that 'CLASV.config' is explicitly added 2024-12-15T15:55:08,715 to the `packages` configuration field. 2024-12-15T15:55:08,716 Alternatively, you can also rely on setuptools' discovery methods 2024-12-15T15:55:08,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-15T15:55:08,717 instead of `find_packages(...)`/`find:`). 2024-12-15T15:55:08,718 You can read more about "package discovery" on setuptools documentation page: 2024-12-15T15:55:08,718 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-15T15:55:08,719 If you don't want 'CLASV.config' to be distributed and are 2024-12-15T15:55:08,720 already explicitly excluding 'CLASV.config' via 2024-12-15T15:55:08,720 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-15T15:55:08,721 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-15T15:55:08,722 combination with a more fine grained `package-data` configuration. 2024-12-15T15:55:08,723 You can read more about "package data files" on setuptools documentation page: 2024-12-15T15:55:08,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-15T15:55:08,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-15T15:55:08,727 even if it does not contain any `.py` files. 2024-12-15T15:55:08,727 On the other hand, currently there is no concept of package data 2024-12-15T15:55:08,728 directory, all directories are treated like packages. 2024-12-15T15:55:08,729 ******************************************************************************** 2024-12-15T15:55:08,730 !! 2024-12-15T15:55:08,730 check.warn(importable) 2024-12-15T15:55:08,731 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'CLASV.raw_data' is absent from the `packages` configuration. 2024-12-15T15:55:08,731 !! 2024-12-15T15:55:08,733 ******************************************************************************** 2024-12-15T15:55:08,733 ############################ 2024-12-15T15:55:08,734 # Package would be ignored # 2024-12-15T15:55:08,734 ############################ 2024-12-15T15:55:08,735 Python recognizes 'CLASV.raw_data' as an importable package[^1], 2024-12-15T15:55:08,735 but it is absent from setuptools' `packages` configuration. 2024-12-15T15:55:08,737 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-15T15:55:08,737 package, please make sure that 'CLASV.raw_data' is explicitly added 2024-12-15T15:55:08,738 to the `packages` configuration field. 2024-12-15T15:55:08,739 Alternatively, you can also rely on setuptools' discovery methods 2024-12-15T15:55:08,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-15T15:55:08,741 instead of `find_packages(...)`/`find:`). 2024-12-15T15:55:08,742 You can read more about "package discovery" on setuptools documentation page: 2024-12-15T15:55:08,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-15T15:55:08,744 If you don't want 'CLASV.raw_data' to be distributed and are 2024-12-15T15:55:08,745 already explicitly excluding 'CLASV.raw_data' via 2024-12-15T15:55:08,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-15T15:55:08,746 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-15T15:55:08,746 combination with a more fine grained `package-data` configuration. 2024-12-15T15:55:08,747 You can read more about "package data files" on setuptools documentation page: 2024-12-15T15:55:08,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-15T15:55:08,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-15T15:55:08,750 even if it does not contain any `.py` files. 2024-12-15T15:55:08,750 On the other hand, currently there is no concept of package data 2024-12-15T15:55:08,751 directory, all directories are treated like packages. 2024-12-15T15:55:08,751 ******************************************************************************** 2024-12-15T15:55:08,752 !! 2024-12-15T15:55:08,752 check.warn(importable) 2024-12-15T15:55:08,753 copying CLASV/.DS_Store -> build/lib/CLASV 2024-12-15T15:55:08,753 copying CLASV/predict_lineage.smk -> build/lib/CLASV 2024-12-15T15:55:08,754 copying CLASV/requirements.txt -> build/lib/CLASV 2024-12-15T15:55:08,755 creating build/lib/CLASV/__pycache__ 2024-12-15T15:55:08,757 copying CLASV/__pycache__/__init__.cpython-311.pyc -> build/lib/CLASV/__pycache__ 2024-12-15T15:55:08,758 copying CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/lib/CLASV/__pycache__ 2024-12-15T15:55:08,761 copying CLASV/__pycache__/install_seqkit.cpython-311.pyc -> build/lib/CLASV/__pycache__ 2024-12-15T15:55:08,767 creating build/lib/CLASV/config 2024-12-15T15:55:08,777 copying CLASV/config/NC_004296.fasta -> build/lib/CLASV/config 2024-12-15T15:55:08,793 copying CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/lib/CLASV/config 2024-12-15T15:55:08,847 copying CLASV/config/configs.yaml -> build/lib/CLASV/config 2024-12-15T15:55:08,850 creating build/lib/CLASV/raw_data 2024-12-15T15:55:08,851 copying CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/lib/CLASV/raw_data 2024-12-15T15:55:08,855 copying CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/lib/CLASV/raw_data 2024-12-15T15:55:08,860 copying CLASV/raw_data/All_LASV_06_07_24.csv -> build/lib/CLASV/raw_data 2024-12-15T15:55:08,882 copying CLASV/raw_data/All_LASV_06_07_24.fasta -> build/lib/CLASV/raw_data 2024-12-15T15:55:09,019 copying CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/lib/CLASV/raw_data 2024-12-15T15:55:09,022 copying CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/lib/CLASV/raw_data 2024-12-15T15:55:09,029 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-15T15:55:09,030 !! 2024-12-15T15:55:09,031 ******************************************************************************** 2024-12-15T15:55:09,032 Please avoid running ``setup.py`` directly. 2024-12-15T15:55:09,032 Instead, use pypa/build, pypa/installer or other 2024-12-15T15:55:09,033 standards-based tools. 2024-12-15T15:55:09,034 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-15T15:55:09,035 ******************************************************************************** 2024-12-15T15:55:09,036 !! 2024-12-15T15:55:09,037 self.initialize_options() 2024-12-15T15:55:09,061 installing to build/bdist.linux-armv7l/wheel 2024-12-15T15:55:09,062 running install 2024-12-15T15:55:09,087 running install_lib 2024-12-15T15:55:09,114 creating build/bdist.linux-armv7l/wheel 2024-12-15T15:55:09,116 creating build/bdist.linux-armv7l/wheel/CLASV 2024-12-15T15:55:09,118 creating build/bdist.linux-armv7l/wheel/CLASV/raw_data 2024-12-15T15:55:09,120 copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,126 copying build/lib/CLASV/raw_data/Bangura_et_al_2024_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,129 copying build/lib/CLASV/raw_data/All_LASV_06_07_24.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,150 copying build/lib/CLASV/raw_data/All_LASV_06_07_24.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,301 copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,306 copying build/lib/CLASV/raw_data/Adesina_et_al_2023_EMI.csv -> build/bdist.linux-armv7l/wheel/./CLASV/raw_data 2024-12-15T15:55:09,310 creating build/bdist.linux-armv7l/wheel/CLASV/config 2024-12-15T15:55:09,312 copying build/lib/CLASV/config/configs.yaml -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-15T15:55:09,314 copying build/lib/CLASV/config/NC_004296.fasta -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-15T15:55:09,316 copying build/lib/CLASV/config/RF_LASV_lineage_n1000_aa.joblib -> build/bdist.linux-armv7l/wheel/./CLASV/config 2024-12-15T15:55:09,446 creating build/bdist.linux-armv7l/wheel/CLASV/__pycache__ 2024-12-15T15:55:09,447 copying build/lib/CLASV/__pycache__/__init__.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__ 2024-12-15T15:55:09,449 copying build/lib/CLASV/__pycache__/install_seqkit.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__ 2024-12-15T15:55:09,452 copying build/lib/CLASV/__pycache__/install_nextclade.cpython-311.pyc -> build/bdist.linux-armv7l/wheel/./CLASV/__pycache__ 2024-12-15T15:55:09,455 copying build/lib/CLASV/install_nextclade.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,458 copying build/lib/CLASV/__init__.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,460 copying build/lib/CLASV/requirements.txt -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,462 copying build/lib/CLASV/install_seqkit.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,464 copying build/lib/CLASV/cli.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,467 copying build/lib/CLASV/core.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,469 copying build/lib/CLASV/pipeline.py -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,472 copying build/lib/CLASV/.DS_Store -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,474 copying build/lib/CLASV/predict_lineage.smk -> build/bdist.linux-armv7l/wheel/./CLASV 2024-12-15T15:55:09,477 running install_egg_info 2024-12-15T15:55:09,518 Copying CLASV.egg-info to build/bdist.linux-armv7l/wheel/./CLASV-0.1.16-py3.11.egg-info 2024-12-15T15:55:09,531 running install_scripts 2024-12-15T15:55:09,531 Installing Nextclade... 2024-12-15T15:55:09,535 Failed to install Nextclade: [Errno 2] No such file or directory: 'python' 2024-12-15T15:55:09,536 Installing Seqkit... 2024-12-15T15:55:09,537 Failed to install Seqkit: [Errno 2] No such file or directory: 'python' 2024-12-15T15:55:09,577 creating build/bdist.linux-armv7l/wheel/CLASV-0.1.16.dist-info/WHEEL 2024-12-15T15:55:09,580 creating '/tmp/pip-wheel-e28ljbj4/CLASV-0.1.16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-15T15:55:09,584 adding 'CLASV/.DS_Store' 2024-12-15T15:55:09,586 adding 'CLASV/__init__.py' 2024-12-15T15:55:09,588 adding 'CLASV/cli.py' 2024-12-15T15:55:09,592 adding 'CLASV/core.py' 2024-12-15T15:55:09,594 adding 'CLASV/install_nextclade.py' 2024-12-15T15:55:09,595 adding 'CLASV/install_seqkit.py' 2024-12-15T15:55:09,597 adding 'CLASV/pipeline.py' 2024-12-15T15:55:09,598 adding 'CLASV/predict_lineage.smk' 2024-12-15T15:55:09,599 adding 'CLASV/requirements.txt' 2024-12-15T15:55:09,601 adding 'CLASV/__pycache__/__init__.cpython-311.pyc' 2024-12-15T15:55:09,603 adding 'CLASV/__pycache__/install_nextclade.cpython-311.pyc' 2024-12-15T15:55:09,605 adding 'CLASV/__pycache__/install_seqkit.cpython-311.pyc' 2024-12-15T15:55:09,606 adding 'CLASV/config/NC_004296.fasta' 2024-12-15T15:55:10,364 adding 'CLASV/config/RF_LASV_lineage_n1000_aa.joblib' 2024-12-15T15:55:10,417 adding 'CLASV/config/configs.yaml' 2024-12-15T15:55:10,420 adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.csv' 2024-12-15T15:55:10,430 adding 'CLASV/raw_data/Adesina_et_al_2023_EMI.fasta' 2024-12-15T15:55:10,474 adding 'CLASV/raw_data/All_LASV_06_07_24.csv' 2024-12-15T15:55:14,008 adding 'CLASV/raw_data/All_LASV_06_07_24.fasta' 2024-12-15T15:55:14,069 adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.csv' 2024-12-15T15:55:14,124 adding 'CLASV/raw_data/Bangura_et_al_2024_EMI.fasta' 2024-12-15T15:55:14,127 adding 'CLASV-0.1.16.dist-info/LICENSE' 2024-12-15T15:55:14,128 adding 'CLASV-0.1.16.dist-info/METADATA' 2024-12-15T15:55:14,129 adding 'CLASV-0.1.16.dist-info/WHEEL' 2024-12-15T15:55:14,130 adding 'CLASV-0.1.16.dist-info/entry_points.txt' 2024-12-15T15:55:14,131 adding 'CLASV-0.1.16.dist-info/top_level.txt' 2024-12-15T15:55:14,132 adding 'CLASV-0.1.16.dist-info/RECORD' 2024-12-15T15:55:14,172 removing build/bdist.linux-armv7l/wheel 2024-12-15T15:55:14,299 Building wheel for clasv (setup.py): finished with status 'done' 2024-12-15T15:55:14,336 Created wheel for clasv: filename=CLASV-0.1.16-py3-none-any.whl size=3464710 sha256=da2929fcce2e7f68ca008ca3afe547bb1bca0da33b6d3b5f31dc93559d323c2f 2024-12-15T15:55:14,337 Stored in directory: /tmp/pip-ephem-wheel-cache-9q6i2_la/wheels/ae/10/94/d977f37a6f2dc44290bf09667144381c809a87c9dcec658e19 2024-12-15T15:55:14,352 Successfully built clasv 2024-12-15T15:55:14,446 Removed build tracker: '/tmp/pip-build-tracker-sn_5eetb'