2025-01-25T16:52:02,856 Created temporary directory: /tmp/pip-build-tracker-r92b4do8 2025-01-25T16:52:02,858 Initialized build tracking at /tmp/pip-build-tracker-r92b4do8 2025-01-25T16:52:02,858 Created build tracker: /tmp/pip-build-tracker-r92b4do8 2025-01-25T16:52:02,859 Entered build tracker: /tmp/pip-build-tracker-r92b4do8 2025-01-25T16:52:02,859 Created temporary directory: /tmp/pip-wheel-bqra62r5 2025-01-25T16:52:02,863 Created temporary directory: /tmp/pip-ephem-wheel-cache-bwcyqvtf 2025-01-25T16:52:02,907 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-25T16:52:02,910 2 location(s) to search for versions of gb2seq: 2025-01-25T16:52:02,910 * https://pypi.org/simple/gb2seq/ 2025-01-25T16:52:02,910 * https://www.piwheels.org/simple/gb2seq/ 2025-01-25T16:52:02,910 Fetching project page and analyzing links: https://pypi.org/simple/gb2seq/ 2025-01-25T16:52:02,911 Getting page https://pypi.org/simple/gb2seq/ 2025-01-25T16:52:02,913 Found index url https://pypi.org/simple/ 2025-01-25T16:52:03,138 Fetched page https://pypi.org/simple/gb2seq/ as application/vnd.pypi.simple.v1+json 2025-01-25T16:52:03,144 Found link https://files.pythonhosted.org/packages/af/00/8ed22bb0ccd6cc5db4ef127813216547b6bc1e7d0ff89e1ea8b6fb0951a1/gb2seq-0.2.0.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.0 2025-01-25T16:52:03,145 Found link https://files.pythonhosted.org/packages/0c/91/0ece14ef7fdce1ca59bcf98ebd336b4336e47e0235639e16cc74706de645/gb2seq-0.2.1.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.1 2025-01-25T16:52:03,145 Found link https://files.pythonhosted.org/packages/a1/6c/4811dc15fbbf3029deb0e1f4e789c5ccd6e82ef64e6456280cfa1e7b5500/gb2seq-0.2.2.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.2 2025-01-25T16:52:03,146 Found link https://files.pythonhosted.org/packages/c6/40/293f9e79b376f355e63034a45f37799fbdeae47b8f4e61d8734dfa6478f3/gb2seq-0.2.3.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.3 2025-01-25T16:52:03,146 Found link https://files.pythonhosted.org/packages/63/93/cd71b29d455df9373a2970c83e812829bbb3047f9f1f7be17cd8392e83e2/gb2seq-0.2.4.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.4 2025-01-25T16:52:03,147 Found link https://files.pythonhosted.org/packages/ae/e1/74990aa8275bd0b902ca68c955ad0948b5cec820dc08d18714e6ccf3b617/gb2seq-0.2.5.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.5 2025-01-25T16:52:03,148 Found link https://files.pythonhosted.org/packages/fc/63/32e3a10b3b022404edff36b4ebb6a46e93d1e2b9014a2a94938da9fb0111/gb2seq-0.2.6.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.6 2025-01-25T16:52:03,149 Found link https://files.pythonhosted.org/packages/06/22/99e49bd674aff1241f15a7bee8018f4995aa4c69641fdd8db8f6813c127c/gb2seq-0.2.7.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.7 2025-01-25T16:52:03,150 Found link https://files.pythonhosted.org/packages/83/43/34726e200ee167af1a320f6085407c98b8017eddfeee127f9547be240770/gb2seq-0.2.8.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.8 2025-01-25T16:52:03,150 Found link https://files.pythonhosted.org/packages/32/82/5313ebd295f1143f0e053b2d2fbf8cedbe053a6aea99bdf5024020369dab/gb2seq-0.2.9.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.9 2025-01-25T16:52:03,151 Found link https://files.pythonhosted.org/packages/8e/42/c6ac0b65a00bbac68744313624e6248fd07ef1d75d0de72c504fcba61bf9/gb2seq-0.2.10.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.10 2025-01-25T16:52:03,152 Found link https://files.pythonhosted.org/packages/f1/a4/372901f00c93c0ef0fa93291a7405e8b3b02ec37a6af7f1ec230ed237a1e/gb2seq-0.2.11.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.11 2025-01-25T16:52:03,152 Found link https://files.pythonhosted.org/packages/2a/ad/493ae436fb0c38463c6c5efee6148e1e5b350186eb79f509d02e79ce8dab/gb2seq-0.2.12.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.12 2025-01-25T16:52:03,153 Found link https://files.pythonhosted.org/packages/81/46/cc66d4e91c3cae805dd8f9dbc6088bd6dcc2d1f8d11565fbfa4402a00614/gb2seq-0.2.13.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.13 2025-01-25T16:52:03,154 Found link https://files.pythonhosted.org/packages/35/a5/d0e055612d7cd107ce9f5da41cbdbfe33c231ee0e885cee6f041a1346bea/gb2seq-0.2.14.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.14 2025-01-25T16:52:03,155 Found link https://files.pythonhosted.org/packages/06/db/a5d0e092203f2cfca66eed766e21561a9215f1b6a4d23817c9efc2684d3c/gb2seq-0.2.15.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.15 2025-01-25T16:52:03,155 Found link https://files.pythonhosted.org/packages/f2/59/729994745b1176a246213ef2f366573eda50f4c3c29d09f6ca48009f9772/gb2seq-0.2.16.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.16 2025-01-25T16:52:03,156 Found link https://files.pythonhosted.org/packages/70/8a/4e2ba1d4f9262897e8982dd547a40c6db74acbec59a152f76d006c27c47c/gb2seq-0.2.17.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.17 2025-01-25T16:52:03,157 Found link https://files.pythonhosted.org/packages/cf/fb/833267bf4c30f32dfd2a3aebb9f1619478e2c71c125370ad2ff13371f705/gb2seq-0.2.18.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.18 2025-01-25T16:52:03,157 Found link https://files.pythonhosted.org/packages/f8/76/e565cd9a26b0cf6d5d9d1c58704138a0cb655912d5742d49f87105d84a47/gb2seq-0.2.19.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.19 2025-01-25T16:52:03,158 Found link https://files.pythonhosted.org/packages/8c/18/f917300fd0f6b621d5e4728cdb69e87d34541e73df3060737215ebd68c4d/gb2seq-0.2.20.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.20 2025-01-25T16:52:03,158 Found link https://files.pythonhosted.org/packages/f2/dc/46eefae2f54602366c67ae2717426f9de897a8604b3c0528143c385da3ff/gb2seq-0.2.21.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.21 2025-01-25T16:52:03,159 Found link https://files.pythonhosted.org/packages/08/40/f27182377062309f44e0b5f2d1abf843a3ee7440211fe15af636a6d92c10/gb2seq-0.2.22.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.22 2025-01-25T16:52:03,159 Found link https://files.pythonhosted.org/packages/c7/fb/25fd08cfdcb8fbc2a303b0f0de7ea10a709e4dcfc5471278cc35c973cf6c/gb2seq-0.2.23.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.23 2025-01-25T16:52:03,160 Found link https://files.pythonhosted.org/packages/95/48/bfcc058cbc9dd448eea16259edc19504b3f79431a98ce057f33d1100d038/gb2seq-0.2.24.tar.gz (from https://pypi.org/simple/gb2seq/), version: 0.2.24 2025-01-25T16:52:03,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/gb2seq/ 2025-01-25T16:52:03,162 Getting page https://www.piwheels.org/simple/gb2seq/ 2025-01-25T16:52:03,163 Found index url https://www.piwheels.org/simple/ 2025-01-25T16:52:03,330 Fetched page https://www.piwheels.org/simple/gb2seq/ as text/html 2025-01-25T16:52:03,336 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.23-py3-none-any.whl#sha256=b6e8b2cd5ae8a965139e49d4343320501482878f69c7079afddd49c78a4bad9c (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,336 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.22-py3-none-any.whl#sha256=4dc7f65d415b43c55d6c33ec947fa3a545d585978ec1fc19c2ba7e7b2bed21b7 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,337 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.21-py3-none-any.whl#sha256=128bbbbf6f183d965872a32ed1939d3d3c5907bd37a2a9e7bda97ca682897e55 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,338 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.20-py3-none-any.whl#sha256=e11512768ed7078ea5925ea0bb7d684e511ad36484bdb6e1c5628f49244db24f (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,338 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.19-py3-none-any.whl#sha256=94718e85107fe0049e7a941e4f0f46d312daf3c8a2bb88b3c580ee582f6f108d (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,339 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.18-py3-none-any.whl#sha256=d8448b65abcb478fed25a9f051afa8d5eb0cc15825cb33ae131e3cddd8c572e8 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,340 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.17-py3-none-any.whl#sha256=c373607931e041604bb512a6f36c3519487d61a82d7bb04833a0bbba6a38ded0 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,340 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.16-py3-none-any.whl#sha256=43373ea2646b17b02a82b0e215a2e34dcc596a1d1369536125da1a87aad1589d (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,340 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.15-py3-none-any.whl#sha256=1ae9fc8c5501ad51071962db58ed26c496172511bce81f56294647eb04b0847c (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,341 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.11-py3-none-any.whl#sha256=261d234327d6e1ff5078b6394505869d939e9d3efd50c1a8f495840bf8b0d07d (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,341 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.10-py3-none-any.whl#sha256=8b7f253656843d39abfd90f6cb0984a2e62ee60bb6e266869916c44e89432fe2 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,342 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.9-py3-none-any.whl#sha256=3a1258f370e4afcf9a6488cb5946b4434c46a5b8ba430cdb04a40a6f57ff4bd1 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,342 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.8-py3-none-any.whl#sha256=d36ccac027663d57fa013430a0c440615ef37361de3a97f75a8a92258629456f (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,343 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.7-py3-none-any.whl#sha256=cd99209a60507ef01add9e58b0767a0431b4eb7486702d67a24421ea439a86b7 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,343 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.5-py3-none-any.whl#sha256=ba29859097ef0c4c03f69e5779955dea2f604d4a4e137117b965976058ed4420 (from https://www.piwheels.org/simple/gb2seq/) (requires-python:>=3.7,<4.0) 2025-01-25T16:52:03,344 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.4-py3-none-any.whl#sha256=493b0d4f3a02acbdd938d7ad53c9ab146f53eb3af0420b1f0cae431cacef7150 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,345 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.3-py3-none-any.whl#sha256=990a6513d22978222ab2478878acb0f5713639de08f1dcc4e2a4823289ade38e (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,345 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.2-py3-none-any.whl#sha256=634652cec9faba6521ea7d2378c41a4d0b83caae8972b63b844e81103b647ce2 (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,346 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.1-py3-none-any.whl#sha256=03ab29eb09f1f43020c86751aa1a31ff88132e478c0091cb0c78024be843d67f (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,346 Skipping link: No binaries permitted for gb2seq: https://www.piwheels.org/simple/gb2seq/gb2seq-0.2.0-py3-none-any.whl#sha256=bea2839bcf01cba97d0267c69da6fdc60537d2f4bcf0e776183240de252449fe (from https://www.piwheels.org/simple/gb2seq/) 2025-01-25T16:52:03,347 Skipping link: not a file: https://www.piwheels.org/simple/gb2seq/ 2025-01-25T16:52:03,347 Skipping link: not a file: https://pypi.org/simple/gb2seq/ 2025-01-25T16:52:03,370 Given no hashes to check 1 links for project 'gb2seq': discarding no candidates 2025-01-25T16:52:03,371 Collecting gb2seq==0.2.24 2025-01-25T16:52:03,374 Created temporary directory: /tmp/pip-unpack-9t1ymwr5 2025-01-25T16:52:03,588 Downloading gb2seq-0.2.24.tar.gz (103 kB) 2025-01-25T16:52:03,746 Added gb2seq==0.2.24 from https://files.pythonhosted.org/packages/95/48/bfcc058cbc9dd448eea16259edc19504b3f79431a98ce057f33d1100d038/gb2seq-0.2.24.tar.gz to build tracker '/tmp/pip-build-tracker-r92b4do8' 2025-01-25T16:52:03,749 Running setup.py (path:/tmp/pip-wheel-bqra62r5/gb2seq_f52c1fb59c3d46ffa15e3acc43f70b40/setup.py) egg_info for package gb2seq 2025-01-25T16:52:03,750 Created temporary directory: /tmp/pip-pip-egg-info-gn6tjn3c 2025-01-25T16:52:03,750 Preparing metadata (setup.py): started 2025-01-25T16:52:03,751 Running command python setup.py egg_info 2025-01-25T16:52:04,888 running egg_info 2025-01-25T16:52:04,915 creating /tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info 2025-01-25T16:52:04,916 writing /tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/PKG-INFO 2025-01-25T16:52:04,919 writing dependency_links to /tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/dependency_links.txt 2025-01-25T16:52:04,921 writing requirements to /tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/requires.txt 2025-01-25T16:52:04,922 writing top-level names to /tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/top_level.txt 2025-01-25T16:52:04,923 writing manifest file '/tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/SOURCES.txt' 2025-01-25T16:52:05,039 reading manifest file '/tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/SOURCES.txt' 2025-01-25T16:52:05,040 reading manifest template 'MANIFEST.in' 2025-01-25T16:52:05,042 adding license file 'AUTHORS' 2025-01-25T16:52:05,045 writing manifest file '/tmp/pip-pip-egg-info-gn6tjn3c/gb2seq.egg-info/SOURCES.txt' 2025-01-25T16:52:05,154 Preparing metadata (setup.py): finished with status 'done' 2025-01-25T16:52:05,158 Source in /tmp/pip-wheel-bqra62r5/gb2seq_f52c1fb59c3d46ffa15e3acc43f70b40 has version 0.2.24, which satisfies requirement gb2seq==0.2.24 from https://files.pythonhosted.org/packages/95/48/bfcc058cbc9dd448eea16259edc19504b3f79431a98ce057f33d1100d038/gb2seq-0.2.24.tar.gz 2025-01-25T16:52:05,159 Removed gb2seq==0.2.24 from https://files.pythonhosted.org/packages/95/48/bfcc058cbc9dd448eea16259edc19504b3f79431a98ce057f33d1100d038/gb2seq-0.2.24.tar.gz from build tracker '/tmp/pip-build-tracker-r92b4do8' 2025-01-25T16:52:05,163 Created temporary directory: /tmp/pip-unpack-h8cu66mg 2025-01-25T16:52:05,164 Created temporary directory: /tmp/pip-unpack-tx_ujzbd 2025-01-25T16:52:05,165 Building wheels for collected packages: gb2seq 2025-01-25T16:52:05,169 Created temporary directory: /tmp/pip-wheel-i7t01kfb 2025-01-25T16:52:05,170 Building wheel for gb2seq (setup.py): started 2025-01-25T16:52:05,171 Destination directory: /tmp/pip-wheel-i7t01kfb 2025-01-25T16:52:05,171 Running command python setup.py bdist_wheel 2025-01-25T16:52:06,184 running bdist_wheel 2025-01-25T16:52:06,314 running build 2025-01-25T16:52:06,315 running build_py 2025-01-25T16:52:06,345 creating build/lib/gb2seq 2025-01-25T16:52:06,347 copying gb2seq/sars2.py -> build/lib/gb2seq 2025-01-25T16:52:06,349 copying gb2seq/checker.py -> build/lib/gb2seq 2025-01-25T16:52:06,352 copying gb2seq/variants.py -> build/lib/gb2seq 2025-01-25T16:52:06,354 copying gb2seq/__init__.py -> build/lib/gb2seq 2025-01-25T16:52:06,357 copying gb2seq/annotate.py -> build/lib/gb2seq 2025-01-25T16:52:06,361 copying gb2seq/genome.py -> build/lib/gb2seq 2025-01-25T16:52:06,366 copying gb2seq/alignment.py -> build/lib/gb2seq 2025-01-25T16:52:06,373 copying gb2seq/change.py -> build/lib/gb2seq 2025-01-25T16:52:06,380 copying gb2seq/translate.py -> build/lib/gb2seq 2025-01-25T16:52:06,389 copying gb2seq/features.py -> build/lib/gb2seq 2025-01-25T16:52:06,401 running egg_info 2025-01-25T16:52:06,431 writing gb2seq.egg-info/PKG-INFO 2025-01-25T16:52:06,434 writing dependency_links to gb2seq.egg-info/dependency_links.txt 2025-01-25T16:52:06,435 writing requirements to gb2seq.egg-info/requires.txt 2025-01-25T16:52:06,437 writing top-level names to gb2seq.egg-info/top_level.txt 2025-01-25T16:52:06,467 reading manifest file 'gb2seq.egg-info/SOURCES.txt' 2025-01-25T16:52:06,471 reading manifest template 'MANIFEST.in' 2025-01-25T16:52:06,472 adding license file 'AUTHORS' 2025-01-25T16:52:06,476 writing manifest file 'gb2seq.egg-info/SOURCES.txt' 2025-01-25T16:52:06,479 creating build/lib/gb2seq/data 2025-01-25T16:52:06,481 copying gb2seq/data/BavPat2.fasta -> build/lib/gb2seq/data 2025-01-25T16:52:06,484 copying gb2seq/data/EPI_ISL_402125.fasta -> build/lib/gb2seq/data 2025-01-25T16:52:06,487 copying gb2seq/data/EPI_ISL_601443.fasta -> build/lib/gb2seq/data 2025-01-25T16:52:06,490 copying gb2seq/data/EPI_ISL_678597.fasta -> build/lib/gb2seq/data 2025-01-25T16:52:06,493 copying gb2seq/data/NC_045512.2.fasta -> build/lib/gb2seq/data 2025-01-25T16:52:06,497 copying gb2seq/data/NC_045512.2.gb -> build/lib/gb2seq/data 2025-01-25T16:52:06,501 running build_scripts 2025-01-25T16:52:06,502 creating build/scripts-3.11 2025-01-25T16:52:06,503 copying and adjusting bin/annotate-genome.py -> build/scripts-3.11 2025-01-25T16:52:06,505 copying and adjusting bin/describe-feature.py -> build/scripts-3.11 2025-01-25T16:52:06,507 copying and adjusting bin/describe-genome.py -> build/scripts-3.11 2025-01-25T16:52:06,510 copying and adjusting bin/describe-site.py -> build/scripts-3.11 2025-01-25T16:52:06,511 changing mode of build/scripts-3.11/annotate-genome.py from 644 to 755 2025-01-25T16:52:06,512 changing mode of build/scripts-3.11/describe-feature.py from 644 to 755 2025-01-25T16:52:06,512 changing mode of build/scripts-3.11/describe-genome.py from 644 to 755 2025-01-25T16:52:06,513 changing mode of build/scripts-3.11/describe-site.py from 644 to 755 2025-01-25T16:52:06,540 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-25T16:52:06,541 !! 2025-01-25T16:52:06,542 ******************************************************************************** 2025-01-25T16:52:06,542 Please avoid running ``setup.py`` directly. 2025-01-25T16:52:06,543 Instead, use pypa/build, pypa/installer or other 2025-01-25T16:52:06,544 standards-based tools. 2025-01-25T16:52:06,545 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-25T16:52:06,545 ******************************************************************************** 2025-01-25T16:52:06,547 !! 2025-01-25T16:52:06,547 self.initialize_options() 2025-01-25T16:52:06,568 installing to build/bdist.linux-armv7l/wheel 2025-01-25T16:52:06,569 running install 2025-01-25T16:52:06,593 running install_lib 2025-01-25T16:52:06,624 creating build/bdist.linux-armv7l/wheel 2025-01-25T16:52:06,626 creating build/bdist.linux-armv7l/wheel/gb2seq 2025-01-25T16:52:06,627 copying build/lib/gb2seq/sars2.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,630 copying build/lib/gb2seq/checker.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,632 copying build/lib/gb2seq/variants.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,633 copying build/lib/gb2seq/__init__.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,635 copying build/lib/gb2seq/annotate.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,638 copying build/lib/gb2seq/genome.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,639 copying build/lib/gb2seq/alignment.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,642 copying build/lib/gb2seq/change.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,645 creating build/bdist.linux-armv7l/wheel/gb2seq/data 2025-01-25T16:52:06,646 copying build/lib/gb2seq/data/NC_045512.2.gb -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,650 copying build/lib/gb2seq/data/EPI_ISL_678597.fasta -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,652 copying build/lib/gb2seq/data/EPI_ISL_601443.fasta -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,655 copying build/lib/gb2seq/data/NC_045512.2.fasta -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,657 copying build/lib/gb2seq/data/EPI_ISL_402125.fasta -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,660 copying build/lib/gb2seq/data/BavPat2.fasta -> build/bdist.linux-armv7l/wheel/./gb2seq/data 2025-01-25T16:52:06,663 copying build/lib/gb2seq/translate.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,665 copying build/lib/gb2seq/features.py -> build/bdist.linux-armv7l/wheel/./gb2seq 2025-01-25T16:52:06,667 running install_egg_info 2025-01-25T16:52:06,700 Copying gb2seq.egg-info to build/bdist.linux-armv7l/wheel/./gb2seq-0.2.24-py3.11.egg-info 2025-01-25T16:52:06,710 running install_scripts 2025-01-25T16:52:06,711 creating build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts 2025-01-25T16:52:06,713 copying build/scripts-3.11/describe-site.py -> build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts 2025-01-25T16:52:06,715 copying build/scripts-3.11/describe-feature.py -> build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts 2025-01-25T16:52:06,718 copying build/scripts-3.11/annotate-genome.py -> build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts 2025-01-25T16:52:06,721 copying build/scripts-3.11/describe-genome.py -> build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts 2025-01-25T16:52:06,726 changing mode of build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts/describe-site.py to 755 2025-01-25T16:52:06,727 changing mode of build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts/describe-feature.py to 755 2025-01-25T16:52:06,727 changing mode of build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts/annotate-genome.py to 755 2025-01-25T16:52:06,728 changing mode of build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.data/scripts/describe-genome.py to 755 2025-01-25T16:52:06,765 creating build/bdist.linux-armv7l/wheel/gb2seq-0.2.24.dist-info/WHEEL 2025-01-25T16:52:06,768 creating '/tmp/pip-wheel-i7t01kfb/gb2seq-0.2.24-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-25T16:52:06,770 adding 'gb2seq/__init__.py' 2025-01-25T16:52:06,776 adding 'gb2seq/alignment.py' 2025-01-25T16:52:06,778 adding 'gb2seq/annotate.py' 2025-01-25T16:52:06,779 adding 'gb2seq/change.py' 2025-01-25T16:52:06,786 adding 'gb2seq/checker.py' 2025-01-25T16:52:06,790 adding 'gb2seq/features.py' 2025-01-25T16:52:06,791 adding 'gb2seq/genome.py' 2025-01-25T16:52:06,793 adding 'gb2seq/sars2.py' 2025-01-25T16:52:06,796 adding 'gb2seq/translate.py' 2025-01-25T16:52:06,797 adding 'gb2seq/variants.py' 2025-01-25T16:52:06,812 adding 'gb2seq/data/BavPat2.fasta' 2025-01-25T16:52:06,827 adding 'gb2seq/data/EPI_ISL_402125.fasta' 2025-01-25T16:52:06,841 adding 'gb2seq/data/EPI_ISL_601443.fasta' 2025-01-25T16:52:06,856 adding 'gb2seq/data/EPI_ISL_678597.fasta' 2025-01-25T16:52:06,870 adding 'gb2seq/data/NC_045512.2.fasta' 2025-01-25T16:52:06,891 adding 'gb2seq/data/NC_045512.2.gb' 2025-01-25T16:52:06,894 adding 'gb2seq-0.2.24.data/scripts/annotate-genome.py' 2025-01-25T16:52:06,896 adding 'gb2seq-0.2.24.data/scripts/describe-feature.py' 2025-01-25T16:52:06,898 adding 'gb2seq-0.2.24.data/scripts/describe-genome.py' 2025-01-25T16:52:06,900 adding 'gb2seq-0.2.24.data/scripts/describe-site.py' 2025-01-25T16:52:06,902 adding 'gb2seq-0.2.24.dist-info/AUTHORS' 2025-01-25T16:52:06,903 adding 'gb2seq-0.2.24.dist-info/METADATA' 2025-01-25T16:52:06,904 adding 'gb2seq-0.2.24.dist-info/WHEEL' 2025-01-25T16:52:06,905 adding 'gb2seq-0.2.24.dist-info/top_level.txt' 2025-01-25T16:52:06,905 adding 'gb2seq-0.2.24.dist-info/RECORD' 2025-01-25T16:52:06,908 removing build/bdist.linux-armv7l/wheel 2025-01-25T16:52:07,025 Building wheel for gb2seq (setup.py): finished with status 'done' 2025-01-25T16:52:07,028 Created wheel for gb2seq: filename=gb2seq-0.2.24-py3-none-any.whl size=114940 sha256=e69e9fd09609e0ca433e955d8bad5ff6e559a1da43c21b802e87e1e35177e85a 2025-01-25T16:52:07,030 Stored in directory: /tmp/pip-ephem-wheel-cache-bwcyqvtf/wheels/1c/88/6a/0d2d5166e20a7588993e3d25911e15bb515b7d316d91b67d93 2025-01-25T16:52:07,039 Successfully built gb2seq 2025-01-25T16:52:07,045 Removed build tracker: '/tmp/pip-build-tracker-r92b4do8'