2026-01-08T00:59:13,316 Created temporary directory: /tmp/pip-ephem-wheel-cache-cslj9ls4 2026-01-08T00:59:13,318 Created temporary directory: /tmp/pip-build-tracker-fcn0ywdq 2026-01-08T00:59:13,318 Initialized build tracking at /tmp/pip-build-tracker-fcn0ywdq 2026-01-08T00:59:13,319 Created build tracker: /tmp/pip-build-tracker-fcn0ywdq 2026-01-08T00:59:13,319 Entered build tracker: /tmp/pip-build-tracker-fcn0ywdq 2026-01-08T00:59:13,320 Created temporary directory: /tmp/pip-wheel-hym4r_7q 2026-01-08T00:59:13,323 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/pyaragorn/pyaragorn-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=8e95e1204a9f87e4bdafbe3761bace31182bb4159c70b1dd8e808ff0fef9eaed (from https://www.piwheels.org/simple/pyaragorn/) (requires-python:>=3.7) 2026-01-08T00:59:13,846 Skipping link: not a file: https://www.piwheels.org/simple/pyaragorn/ 2026-01-08T00:59:13,846 Skipping link: not a file: https://pypi.org/simple/pyaragorn/ 2026-01-08T00:59:13,866 Given no hashes to check 1 links for project 'pyaragorn': discarding no candidates 2026-01-08T00:59:13,884 Collecting pyaragorn==0.3.0 2026-01-08T00:59:13,886 Created temporary directory: /tmp/pip-unpack-69vdxy1_ 2026-01-08T00:59:14,021 Downloading pyaragorn-0.3.0.tar.gz (465 kB) 2026-01-08T00:59:14,240 Added pyaragorn==0.3.0 from https://files.pythonhosted.org/packages/eb/89/aae10bda1b098ffb748303a799c32a80d3f9b08234a0d7cea1fc52cde2c4/pyaragorn-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-fcn0ywdq' 2026-01-08T00:59:14,249 Created temporary 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In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T00:59:16,144 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T00:59:16,733 Collecting scikit-build-core 2026-01-08T00:59:16,758 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl (185 kB) 2026-01-08T00:59:18,883 Collecting cython>=3.0 2026-01-08T00:59:19,667 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-01-08T00:59:20,040 Collecting pycparser>=2.0 2026-01-08T00:59:20,060 Using cached https://www.piwheels.org/simple/pycparser/pycparser-2.23-py3-none-any.whl (118 kB) 2026-01-08T00:59:20,395 Collecting packaging>=23.2 2026-01-08T00:59:20,412 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2026-01-08T00:59:20,521 Collecting pathspec>=0.10.1 2026-01-08T00:59:20,537 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.0.1-py3-none-any.whl (54 kB) 2026-01-08T00:59:23,441 Installing collected packages: pycparser, pathspec, packaging, cython, scikit-build-core 2026-01-08T00:59:28,294 Creating /tmp/pip-build-env-bbbqdgws/overlay/local/bin 2026-01-08T00:59:28,297 changing mode of /tmp/pip-build-env-bbbqdgws/overlay/local/bin/cygdb to 755 2026-01-08T00:59:28,300 changing mode of /tmp/pip-build-env-bbbqdgws/overlay/local/bin/cython to 755 2026-01-08T00:59:28,303 changing mode of /tmp/pip-build-env-bbbqdgws/overlay/local/bin/cythonize to 755 2026-01-08T00:59:28,986 Successfully installed cython-3.2.4 packaging-25.0 pathspec-1.0.1 pycparser-2.23 scikit-build-core-0.11.6 2026-01-08T00:59:29,326 Installing build dependencies: finished with status 'done' 2026-01-08T00:59:29,332 Getting requirements to build wheel: started 2026-01-08T00:59:29,333 Running command Getting requirements to build wheel 2026-01-08T00:59:29,964 Getting requirements to build wheel: finished with status 'done' 2026-01-08T00:59:29,967 Created temporary directory: /tmp/pip-modern-metadata-668unz66 2026-01-08T00:59:29,970 Preparing metadata (pyproject.toml): started 2026-01-08T00:59:29,971 Running command Preparing metadata (pyproject.toml) 2026-01-08T00:59:30,640 2026-01-08 00:59:30,639 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyaragorn.tests 2026-01-08T00:59:30,689 *** scikit-build-core 0.11.6 using CMake 3.25.1 (metadata_wheel) 2026-01-08T00:59:30,806 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-08T00:59:30,811 Source in /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a has version 0.3.0, which satisfies requirement pyaragorn==0.3.0 from https://files.pythonhosted.org/packages/eb/89/aae10bda1b098ffb748303a799c32a80d3f9b08234a0d7cea1fc52cde2c4/pyaragorn-0.3.0.tar.gz 2026-01-08T00:59:30,812 Removed pyaragorn==0.3.0 from https://files.pythonhosted.org/packages/eb/89/aae10bda1b098ffb748303a799c32a80d3f9b08234a0d7cea1fc52cde2c4/pyaragorn-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-fcn0ywdq' 2026-01-08T00:59:30,818 Created temporary directory: /tmp/pip-unpack-3g9ijm6j 2026-01-08T00:59:30,819 Building wheels for collected packages: pyaragorn 2026-01-08T00:59:30,823 Created temporary directory: /tmp/pip-wheel-lqnxgk4z 2026-01-08T00:59:30,824 Destination directory: /tmp/pip-wheel-lqnxgk4z 2026-01-08T00:59:30,826 Building wheel for pyaragorn (pyproject.toml): started 2026-01-08T00:59:30,827 Running command Building wheel for pyaragorn (pyproject.toml) 2026-01-08T00:59:31,470 2026-01-08 00:59:31,470 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyaragorn.tests 2026-01-08T00:59:31,517 *** scikit-build-core 0.11.6 using CMake 3.25.1 (wheel) 2026-01-08T00:59:31,547 *** Configuring CMake... 2026-01-08T00:59:31,644 loading initial cache file build/Release/CMakeInit.txt 2026-01-08T00:59:31,919 -- The C compiler identification is GNU 12.2.0 2026-01-08T00:59:31,995 -- Detecting C compiler ABI info 2026-01-08T00:59:32,258 -- Detecting C compiler ABI info - done 2026-01-08T00:59:32,296 -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc - skipped 2026-01-08T00:59:32,297 -- Detecting C compile features 2026-01-08T00:59:32,300 -- Detecting C compile features - done 2026-01-08T00:59:33,001 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module Development.SABIModule 2026-01-08T00:59:33,003 -- Looking for PyInterpreterState_GetID 2026-01-08T00:59:33,572 -- Looking for PyInterpreterState_GetID - not found 2026-01-08T00:59:33,728 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module 2026-01-08T00:59:33,735 -- Building in Limited API mode for Python: 3.11 2026-01-08T00:59:33,739 -- Configuring done 2026-01-08T00:59:33,772 -- Generating done 2026-01-08T00:59:33,815 -- Build files have been written to: /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a/build/Release 2026-01-08T00:59:33,846 *** Building project with Ninja... 2026-01-08T00:59:41,858 [1/8] Converting /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a/vendor/aragorn/aragorn1.2.41.c to a library structure 2026-01-08T00:59:42,059 [2/8] Building C object src/aragorn/CMakeFiles/aragorn.dir/data.c.o 2026-01-08T01:00:08,633 [3/8] Building C object src/aragorn/CMakeFiles/aragorn.dir/aragorn.c.o 2026-01-08T01:00:08,635 /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a/build/Release/src/aragorn/aragorn.c: In function ‘write_to_library’: 2026-01-08T01:00:08,635 /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a/build/Release/src/aragorn/aragorn.c:1312:26: warning: trigraph ??( ignored, use -trigraphs to enable [-Wtrigraphs] 2026-01-08T01:00:08,636 1312 | fprintf(f, " %s-???(%c%c)", trnatype[sw->mtrna], cbase(*s), cbase(*(s + 1))); 2026-01-08T01:00:08,637 | 2026-01-08T01:00:08,637 /tmp/pip-wheel-hym4r_7q/pyaragorn_9df7fb55a2934e348238c9e805afcf6a/build/Release/src/aragorn/aragorn.c:1316:26: warning: trigraph ??( ignored, use -trigraphs to enable [-Wtrigraphs] 2026-01-08T01:00:08,638 1316 | fprintf(f, " %s-???(%c%c%c%c)", trnatype[sw->mtrna], cbase(*s), cbase(s[1]), cbase(s[2]), cbase(s[3])); 2026-01-08T01:00:08,638 | 2026-01-08T01:00:08,879 [4/8] Linking C static library src/aragorn/libaragorn.a 2026-01-08T01:00:14,455 [5/8] Cythonizing lib.pyx to lib.c 2026-01-08T01:00:15,105 [6/8] Building C object src/pyaragorn/CMakeFiles/pyaragorn.lib.dir/cmake_pch.h.gch 2026-01-08T01:00:32,820 [7/8] Building C object src/pyaragorn/CMakeFiles/pyaragorn.lib.dir/lib.c.o 2026-01-08T01:00:32,957 [8/8] Linking C shared module src/pyaragorn/lib.abi3.so 2026-01-08T01:00:32,963 *** Installing project into wheel... 2026-01-08T01:00:33,005 -- Install configuration: "Release" 2026-01-08T01:00:33,010 -- Installing: /tmp/tmppbwg7zt9/wheel/platlib/pyaragorn/lib.abi3.so 2026-01-08T01:00:33,059 *** Making wheel... 2026-01-08T01:00:33,364 *** Created pyaragorn-0.3.0-cp311-abi3-linux_armv7l.whl 2026-01-08T01:00:33,432 Building wheel for pyaragorn (pyproject.toml): finished with status 'done' 2026-01-08T01:00:33,442 Created wheel for pyaragorn: filename=pyaragorn-0.3.0-cp311-abi3-linux_armv7l.whl size=546715 sha256=c1f4e26a69361f627d0bf21c42f721e821f7d8b2479cce435e13a3c58cc6545f 2026-01-08T01:00:33,443 Stored in directory: /tmp/pip-ephem-wheel-cache-atvinjqp/wheels/3d/82/2b/baa28e23c3d13a6731de550e423541c3840aa1a8efa370c928 2026-01-08T01:00:33,456 Successfully built pyaragorn 2026-01-08T01:00:33,477 Removed build tracker: '/tmp/pip-build-tracker-fcn0ywdq'