gnomad-db

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install gnomad-db

Releases

Version Released Buster
Python 3.7
Bullseye
Python 3.9
Bookworm
Python 3.11
Files
0.1.4 2023-11-04      
0.1.3 2023-11-04
0.1.2 2022-07-13    
0.1.1 2021-12-13    
0.1.0 2021-12-12    
0.0.7 2021-06-30    
0.0.6 2021-06-30    
0.0.5 2021-06-30    
0.0.4 2021-05-17    
0.0.3 2021-05-09    
0.0.2 2021-05-08    
0.0.1 2021-05-08    
0.0.0 2021-05-08

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Page last updated 2023-11-04 11:03:32 UTC